Search result

BaseInfo

ncRNA ID novel_gma_miR2093
Species Glycine max
Class miRNA
Genome position Chr8:28346276-28346335 [+]
Reference genome Glycine_max_v2.0
Source SRR1294482;SRR1294484;SRR1292924;SRR1295517;SRR1295521;SRR1292925;SRR1295524;SRR1295525;SRR1295526;SRR1295530;SRR1292928;SRR1451606;SRR1451607;SRR1451610;SRR1451611;SRR1292929;SRR1294476;SRR1294477
Length 22
Mature sequence(if miRNA) 39 - GGAGGAAGAAUCUGGAAGGCCU - 60
Stem-loop(if miRNA) --  GAG       G             - A
  GC   CCAGGUU CUUCCUCCAGAAG C A
  ||   ||||||| ||||||||||||| |
  CG   GGUCUAA GAAGGAGGUCUUC G C
UC  GAA       -             C C
Stem-loop sequence GCGAGCCAGGUUGCUUCCUCCAGAAGCAACCGCCUUCUGGAGGAAGAAUCUGGAAGGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014767180.1
ncRNA:22   UCCGGAAGGUCUAAGAAGGAGG   1
  ||*|||**||||||||||||||
targets:4079   AGCCCUAACAGAUUCUUCCUCC   4100

2.0 PREDICTED: Glycine max probable pre-mRNA-splicing factor ATP-dependent RNA helicase (LOC100790809), transcript variant X4, mRNA probable pre-mRNA-splicing factor ATP-dependent RNA helicase(LOC100790809) coding protein psRNATarget