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BaseInfo

ncRNA ID novel_gma_miR2083
Species Glycine max
Class miRNA
Genome position Chr4:30937216-30937269 [-]
Reference genome Glycine_max_v2.0
Source SRR1451653;SRR1451654;SRR1451655;SRR1451658;SRR1451662
Length 22
Mature sequence(if miRNA) 1 - CAAGGAAAGCAUCAAUGGCGGC - 22
Stem-loop(if miRNA) --     C   -A  C       -   G
  CGCCA UGG  CU UCCUUGC UAU G
  ||||| |||  || ||||||| |||
  GCGGU ACU  GA AGGAACG AUA U
CG     A   AC  A       U   G
Stem-loop sequence CGCCACUGGACUCUCCUUGCUAUGGUGAUAUGCAAGGAAAGCAUCAAUGGCGGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003526943.3
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*=|||||||||||||||
targets:881   CUUGCAGUUGAUGCUUUCCUUG   902

2.0 PREDICTED: Glycine max cytochrome P450 71A1-like (LOC100792382), mRNA cytochrome P450 71A1-like(LOC100792382) coding protein psRNATarget
XM_014762407.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:2997   UUUGCAAUGGAUGCUUUCCUUG   3018

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100805894), transcript variant X2, mRNA ATP-dependent helicase BRM-like(LOC100805894) coding protein psRNATarget
XM_003552354.3
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3318   UUUGCAAUGGAUGCUUUCCUUG   3339

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X5, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_014770814.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3012   UUUGCAAUGGAUGCUUUCCUUG   3033

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X6, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_014770813.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3395   UUUGCAAUGGAUGCUUUCCUUG   3416

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X4, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602745.2
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3427   UUUGCAAUGGAUGCUUUCCUUG   3448

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X2, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006602746.2
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3433   UUUGCAAUGGAUGCUUUCCUUG   3454

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X3, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_003534506.3
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3428   UUUGCAAUGGAUGCUUUCCUUG   3449

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100805894), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100805894) coding protein psRNATarget
XM_006602744.2
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *==||*||*|||||||||||||
targets:3443   UUUGCAAUGGAUGCUUUCCUUG   3464

2.0 PREDICTED: Glycine max ATP-dependent helicase BRM-like (LOC100811608), transcript variant X1, mRNA ATP-dependent helicase BRM-like(LOC100811608) coding protein psRNATarget
XM_006605010.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  ||*||*||||||||*|||||||
targets:550   GCGGCGAUUGAUGCCUUCCUUG   571

2.5 PREDICTED: Glycine max uncharacterized LOC102665506 (LOC102665506), mRNA uncharacterized LOC102665506(LOC102665506) coding protein psRNATarget
NM_001248592.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *=|||*=|*|||||||||||||
targets:769   CUCGCAGUAGAUGCUUUCCUUG   790

3.0 Glycine max cytochrome P450 71A10 (CYP71A10), mRNA cytochrome P450 71A10(CYP71A10) coding protein psRNATarget
AF022157.1
ncRNA:22   CGGCGGUAACUACGAAAGGAAC   1
  *=|||*=|*|||||||||||||
targets:769   CUCGCAGUAGAUGCUUUCCUUG   790

3.0 Glycine max cytochrome P450 monooxygenase CYP71A10 (CYP71A10) mRNA, complete cds NA coding protein psRNATarget
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