Search result

BaseInfo

ncRNA ID	novel_gma_miR2081
Species	Glycine max
Class	miRNA
Genome position	Chr3:13602820-13603015 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1292924;SRR1294484;SRR1294485;SRR1294486;SRR1294487;SRR2045377;SRR1295517;SRR1295519;SRR1295521;SRR1295524;SRR1295526;SRR1295530;SRR1295531;SRR1292928;SRR1294476
Length	24
Mature sequence(if miRNA)	1 - AAUGGCAGCGGAAUGGAGAAAGAA - 24
Stem-loop(if miRNA)	--CC                    C UC   C                       G                                   U      U     UUCUCCAUUCUGCUGCCAUU A  UUC AAGAAGCAAGGGAAUCCAUUGAU AAGAAGAUCCAAGGCCUACAAGCUCCAAUGGAGCU ACAUCA G     |||||||||||||||||||| |  ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||     AAGAGGUAAGGCGACGGUAA U  AAG UUCUUCGUUUCCUUAGGUAACUA UUCUUCUAGGUUCCGGAUGUUCGAGGUUACCUCGA UGUAGU C AAGA                    U UU   -                       G                                   -      A
Stem-loop sequence	CCUUCUCCAUUCUGCUGCCAUUCAUCUUCCAAGAAGCAAGGGAAUCCAUUGAUGAAGAAGAUCCAAGGCCUACAAGCUCCAAUGGAGCUUACAUCAUGCAUGAUGUAGCUCCAUUGGAGCUUGUAGGCCUUGGAUCUUCUUGAUCAAUGGAUUCCUUUGCUUCUUGAAUUUUAAUGGCAGCGGAAUGGAGAAAGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK286453.1	ncRNA:24   AAG--AAAGAGGUAAGGCGACGGUAA   1   |||--||||||||||||||||||||| targets:1490   UUCCCUUUCUCCAUUCCGCUGCCAUU   1515 Target Full Sequence	0.0	Glycine max cDNA, clone: GMFL01-28-L19	NA	coding protein	psRNATarget
BT095722.1	ncRNA:24   AAGAAAGAGGUAAGGCGACGGUAA   1   |||*|||||||||||||||||||| targets:38   UUCCUUCUCCAUUCCGCUGCCAUU   61 Target Full Sequence	0.0	Soybean clone JCVI-FLGm-15I19 unknown mRNA	NA	coding protein	psRNATarget
XM_006587612.2	ncRNA:24   AAGAAAGAGGUAAGGCGACGGUAA   1   **|||||||||||||||||||||| targets:6   CCCUUUCUCCAUUCCGCUGCCAUU   29 Target Full Sequence	0.0	PREDICTED: Glycine max maltose excess protein 1, chloroplastic-like (LOC102668505), transcript variant X2, mRNA	maltose excess protein 1, chloroplastic-like(LOC102668505)	coding protein	psRNATarget
XM_006587611.2	ncRNA:24   AAGAAAGAGGUAAGGCGACGGUAA   1   **|||||||||||||||||||||| targets:11   CCCUUUCUCCAUUCCGCUGCCAUU   34 Target Full Sequence	0.0	PREDICTED: Glycine max maltose excess protein 1, chloroplastic-like (LOC102668505), transcript variant X1, mRNA	maltose excess protein 1, chloroplastic-like(LOC102668505)	coding protein	psRNATarget