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BaseInfo

ncRNA ID	novel_gma_miR2065
Species	Glycine max
Class	miRNA
Genome position	Chr9:45247926-45248120 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451652;SRR1451661;SRR1451663;SRR1451664;SRR1451609;SRR1451615
Length	24
Mature sequence(if miRNA)	1 - AUUAAAAUAUAAAAUAUAAGGACU - 24
Stem-loop(if miRNA)	--   A    A              A        UU        ---A     A   AA              -------A    C    UU     UA    U   UUC UAUA UUUAUAUUUUAAUU UCUUUUAA  UUUACUAA    AUUAU UAA  AUAAUUAGUUAUAA        UUAU AAUU  UUUAU  UAAA U   ||| |||| |||||||||||||| ||||||||  ||||||||    ||||| |||  ||||||||||||||        |||| ||||  |||||  ||||   AGG AUAU AAAUAUAAAAUUAA AGAAAAUU  GAAUGGUU    UAAUA GUU  UGUUAAUCAAUAUU        AAUA UUAA  AAAUA  GUUU A UC   A    A              G        -U        AUUA     -   AA              GUUCAUUA    -    UU     GC    U
Stem-loop sequence	UUCAUAUAAUUUAUAUUUUAAUUAUCUUUUAAUUUUUACUAAAAUUAUAUAAAAAUAAUUAGUUAUAAAUUAUCAAUUUUUUUAUUAUAAAUUAUUUUGCGAUAAAUUAAUUAUAAAUUACUUGUUAUAACUAAUUGUAAUUGAUAAUAUUAUUGGUAAGUUUAAAAGAGAAUUAAAAUAUAAAAUAUAAGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014778523.1	ncRNA:24   UCAG---GAAUAUAAAAUAUAAAAUUA   1   |||=---||||||||||=||||||||| targets:17   AGUUUUUCUUAUAUUUUGUAUUUUAAU   43 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102666527 (LOC102666527), mRNA	uncharacterized LOC102666527(LOC102666527)	coding protein	psRNATarget
XM_003521041.3	ncRNA:24   UCAGGAAUAUAAAAUAUAAAAUUA   1   **||=||=*||||||||||||||| targets:895   UAUCUUUGAAUUUUAUAUUUUAAU   918 Target Full Sequence	2.0	PREDICTED: Glycine max GATA transcription factor 2-like (LOC100803262), mRNA	GATA transcription factor 2-like(LOC100803262)	coding protein	psRNATarget
XM_003527667.3	ncRNA:24   UCAGGAAUAUAAAAUAUAAAAUUA   1   |||==||=||||||||||||||=| targets:1235   AGUUUUUGUAUUUUAUAUUUUAGU   1258 Target Full Sequence	2.5	PREDICTED: Glycine max BRI1 kinase inhibitor 1-like (LOC100784967), mRNA	BRI1 kinase inhibitor 1-like(LOC100784967)	coding protein	psRNATarget
XM_006605453.2	ncRNA:24   UCAGGAAUAUAAAAUAUAAAAUUA   1   |*||=|||*||||||||*|||||| targets:2357   AAUCUUUAAAUUUUAUAAUUUAAU   2380 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102670399 (LOC102670399), transcript variant X1, mRNA	uncharacterized LOC102670399(LOC102670399)	coding protein	psRNATarget
XM_014773063.1	ncRNA:24   UCAGGAAUAUAAAAUAUAAAAUUA   1   |*||=|||*||||||||*|||||| targets:1948   AAUCUUUAAAUUUUAUAAUUUAAU   1971 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102670399 (LOC102670399), transcript variant X2, mRNA	uncharacterized LOC102670399(LOC102670399)	coding protein	psRNATarget
XM_003555850.3	ncRNA:24   UCAGGAAUAUA-AAAUAUAAAAUUA   1   **||=||||||-||||||||||||| targets:784   CUUCUUUAUAUAUUUAUAUUUUAAU   808 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100815402 (LOC100815402), mRNA	uncharacterized LOC100815402(LOC100815402)	coding protein	psRNATarget