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BaseInfo

ncRNA ID novel_gma_miR2063
Species Glycine max
Class miRNA
Genome position Chr8:40985098-40985208 [+]
Reference genome Glycine_max_v2.0
Source SRR1451652
Length 21
Mature sequence(if miRNA) 1 - CUGGAGAACAGUAUCAAAAGC - 21
Stem-loop(if miRNA) --C                     A   C    C GG       -    GUC    U
   UGGAGAACAGUAUCAAAAGCA CUA GGAA U  AUCUAAG UUUU   CCUA U
   ||||||||||||||||||||| ||| |||| |  ||||||| ||||   ||||
   ACCUCUUGUUAUGGUUUUCGU GAU CCUU A  UAGAUUC GAAA   GGAU U
CUA                     G   U    C AG       U    --A    U
Stem-loop sequence CUGGAGAACAGUAUCAAAAGCAACUACGGAACUGGAUCUAAGUUUUGUCCCUAUUUUUAGGAAAAGUCUUAGAUGAACUUCCUUAGGUGCUUUUGGUAUUGUUCUCCAAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006604676.2
ncRNA:21   CGAAAACUAUGACAAGAGGUC   1
  *||||*|||||||*|||||||
targets:2918   UCUUUAGAUACUGGUCUCCAG   2938

2.5 PREDICTED: Glycine max DNA mismatch repair protein MSH6 (LOC100811104), mRNA DNA mismatch repair protein MSH6(LOC100811104) coding protein psRNATarget