Search result

BaseInfo

ncRNA ID	novel_gma_miR2062
Species	Glycine max
Class	miRNA
Genome position	Chr8:34488834-34488888 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451652
Length	19
Mature sequence(if miRNA)	1 - AAGAUGAUGAACUAUGCCU - 19
Stem-loop(if miRNA)	ACAU     UC    UUCUUGGAUUAGGU     AGGCA  AUCC              U     |||||  ||||     UCCGU  UCAA              G ----     -A    GUAGUAGAAGACUG
Stem-loop sequence	ACAUAGGCAUCAUCCUUCUUGGAUUAGGUUGGUCAGAAGAUGAUGAACUAUGCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014766390.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:282   AGGCAUAGUUCACCAUCUU   300 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC106795708 (LOC106795708), mRNA	uncharacterized LOC106795708(LOC106795708)	coding protein	psRNATarget
XM_006606906.2	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   |||||||||*||||||||| targets:1211   AGGCAUAGUGCAUCAUCUU   1229 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102669424 (LOC102669424), mRNA	uncharacterized LOC102669424(LOC102669424)	coding protein	psRNATarget
XM_014775065.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:2302   AGGCAUAGUUCACCAUCUU   2320 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X4, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775059.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:2155   AGGCAUAGUUCACCAUCUU   2173 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X1, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775066.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:2299   AGGCAUAGUUCACCAUCUU   2317 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X5, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775062.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:2300   AGGCAUAGUUCACCAUCUU   2318 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X3, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_014775060.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||||||||||*|||||| targets:2300   AGGCAUAGUUCACCAUCUU   2318 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC102659952 (LOC102659952), transcript variant X2, mRNA	uncharacterized LOC102659952(LOC102659952)	coding protein	psRNATarget
XM_006603045.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||=||||*||||||||| targets:94   AGGCGUAGUGCAUCAUCUU   112 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102661534 (LOC102661534), mRNA	uncharacterized LOC102661534(LOC102661534)	coding protein	psRNATarget
XM_006577530.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||=||||*||||||||| targets:145   AGGCGUAGUGCAUCAUCUU   163 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102666738 (LOC102666738), mRNA	uncharacterized LOC102666738(LOC102666738)	coding protein	psRNATarget
XM_006575101.2	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   ||||=||||*||||||||| targets:730   AGGCGUAGUGCAUCAUCUU   748 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102660255 (LOC102660255), transcript variant X1, mRNA	uncharacterized LOC102660255(LOC102660255)	coding protein	psRNATarget
XM_003546106.3	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   |||||*=|||||||||||| targets:1778   AGGCAGGGUUCAUCAUCUU   1796 Target Full Sequence	2.5	PREDICTED: Glycine max ankyrin repeat domain-containing protein 13C-like (LOC100798925), mRNA	ankyrin repeat domain-containing protein 13C-like(LOC100798925)	coding protein	psRNATarget
XM_006601534.1	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   |*|||||||*||||||||| targets:94   AAGCAUAGUGCAUCAUCUU   112 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC102664391 (LOC102664391), mRNA	uncharacterized LOC102664391(LOC102664391)	coding protein	psRNATarget
XM_003548768.3	ncRNA:19   UCCGUAUCAAGUAGUAGAA   1   =||||*||||||||||||* targets:470   GGGCAAAGUUCAUCAUCUC   488 Target Full Sequence	3.0	PREDICTED: Glycine max uncharacterized LOC100781263 (LOC100781263), mRNA	uncharacterized LOC100781263(LOC100781263)	coding protein	psRNATarget