| ncRNA ID | ath-miR1886.3 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:15611870-15611982 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 84 - AAUUAAAGAUUUCAUCUUACU - 104 |
| Stem-loop(if miRNA) |
GA A A ----AU GACGAUGCU GUGAG GAAGUGAGAUGAAAUCUUUGAUUGG AAUUUC GUA A ||||| ||||||||||||||||||||||||| |||||| ||| UACUC CUUCAUUCUACUUUAGAAAUUAACC UUAAAG AGU U -G C C AAAACC AUACCCCAC |
| Stem-loop sequence | GAGUGAGAGAAGUGAGAUGAAAUCUUUGAUUGGAAAUUUCAUGUAGACGAUGCUAUCACCCCAUAUGACCAAAAGAAAUUCCCAAUUAAAGAUUUCAUCUUACUUCCCUCAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001336640.1 |
|
2.5 | Arabidopsis thaliana Transducin/WD40 repeat-like superfamily protein mRNA | Transducin/WD40 repeat-like superfamily protein(AT2G37160) | coding protein | psRNATarget |
| 1 | PMID:18542052
"Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends"; German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ; Nat Biotechnol. 26:941-946(2008). |
| 2 | PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing"; Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC; RNA. 15:992-1002(2009). |