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BaseInfo

ncRNA ID novel_gma_miR2035
Species Glycine max
Class miRNA
Genome position Chr3:41125675-41125877 [+]
Reference genome Glycine_max_v2.0
Source SRR1451652;SRR1451654;SRR1295531;SRR1451605;SRR1451608;SRR1451615;SRR1451621
Length 22
Mature sequence(if miRNA) 1 - CUAGUUGGUGUGCAUUAGCAUU - 22
Stem-loop(if miRNA) --        U                   C               A          AAUC                            C      -   GA
  CUAGUUGG GUGCAUUAGCAUUUAACAC AAAAAAUUUGGAUUA AAAACCAUUG    UUUUGUUUUUCAAAAUUUAAUUUAAGGA AUUAUC UAU  U
  |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    |||||||||||||||||||||||||||| |||||| |||
  GAUCAACC CACGUAAUCGUAAGUUGUG UUUUUUAAACUUGAU UUUUGGUAAC    AAAACAAAAGGUUUUAAAUUAAGUUCCU UAAUAG AUA  G
GG        U                   U               A          CAAC                            A      C   AA
Stem-loop sequence CUAGUUGGUGUGCAUUAGCAUUUAACACCAAAAAAUUUGGAUUAAAAAACCAUUGAAUCUUUUGUUUUUCAAAAUUUAAUUUAAGGACAUUAUCUAUGAUGAAAUACGAUAAUAUCCUUGAAUUAAAUUUUGGAAAACAAAACAACCAAUGGUUUUAUAGUUCAAAUUUUUUUGUGUUGAAUGCUAAUGCACUCCAACUAGGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287002.1
ncRNA:21   UACGAUUACGUGUGGUUGAUC   1
  =*|||*||||||||||||||*
targets:1   GAGCUUAUGCACACCAACUAA   21

2.0 Glycine max cDNA, clone: GMFL01-41-P09 NA coding protein psRNATarget
XM_003544796.3
ncRNA:22   UUACGAUUACGUGUGGUUGAUC   1
  ***|||*||||||||||||||*
targets:182   UUAGCUUAUGCACACCAACUAA   203

2.0 PREDICTED: Glycine max glutamyl-tRNA reductase 1, chloroplastic (LOC100815985), mRNA glutamyl-tRNA reductase 1, chloroplastic(LOC100815985) coding protein psRNATarget