ncRNA ID | novel_gma_miR2035 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr3:41125675-41125877 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451652;SRR1451654;SRR1295531;SRR1451605;SRR1451608;SRR1451615;SRR1451621 |
Length | 22 |
Mature sequence(if miRNA) | 1 - CUAGUUGGUGUGCAUUAGCAUU - 22 |
Stem-loop(if miRNA) |
--        U                   C               A          AAUC                            C      -   GA   CUAGUUGG GUGCAUUAGCAUUUAACAC AAAAAAUUUGGAUUA AAAACCAUUG    UUUUGUUUUUCAAAAUUUAAUUUAAGGA AUUAUC UAU  U   |||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||    |||||||||||||||||||||||||||| |||||| |||   GAUCAACC CACGUAAUCGUAAGUUGUG UUUUUUAAACUUGAU UUUUGGUAAC    AAAACAAAAGGUUUUAAAUUAAGUUCCU UAAUAG AUA  G GG        U                   U               A          CAAC                            A      C   AA |
Stem-loop sequence | CUAGUUGGUGUGCAUUAGCAUUUAACACCAAAAAAUUUGGAUUAAAAAACCAUUGAAUCUUUUGUUUUUCAAAAUUUAAUUUAAGGACAUUAUCUAUGAUGAAAUACGAUAAUAUCCUUGAAUUAAAUUUUGGAAAACAAAACAACCAAUGGUUUUAUAGUUCAAAUUUUUUUGUGUUGAAUGCUAAUGCACUCCAACUAGGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK287002.1 |
|
2.0 | Glycine max cDNA, clone: GMFL01-41-P09 | NA | coding protein | psRNATarget | |||||||||
XM_003544796.3 |
|
2.0 | PREDICTED: Glycine max glutamyl-tRNA reductase 1, chloroplastic (LOC100815985), mRNA | glutamyl-tRNA reductase 1, chloroplastic(LOC100815985) | coding protein | psRNATarget |