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BaseInfo

ncRNA ID	novel_gma_miR2003
Species	Glycine max
Class	miRNA
Genome position	Chr17:40168738-40168854 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451652
Length	24
Mature sequence(if miRNA)	94 - AAACAAACAUAAUUUAUAAGGACU - 117
Stem-loop(if miRNA)	---     C       A        -      UA  UUUA         --A    AUACU    UCUUA AAAUUAU UUUGUUUU AUUUUU  UC    UAACGCUUU   GAUA     U    ||||| ||||||| |||||||| ||||||  ||    |||||||||   ||||     U    GGAAU UUUAAUA AAACAAAA UAAAAA  AG    AUUGCGAGA   UUGU     U UCA     A       C        A      UC  --CA         AAC    CCUUU
Stem-loop sequence	UCUUACAAAUUAUAUUUGUUUUAUUUUUUAUCUUUAUAACGCUUUAGAUAAUACUUUUUUUCCUGUUCAAAGAGCGUUAACGACUAAAAAUAAAAACAAACAUAAUUUAUAAGGACU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003527393.3	ncRNA:24   UCAGGAAUAUUUAAUACAAACAAA   1   |*||||||||||*||||||||||| targets:1364   AAUCCUUAUAAAAUAUGUUUGUUU   1387 Target Full Sequence	1.5	PREDICTED: Glycine max bifunctional epoxide hydrolase 2-like (LOC100811159), mRNA	bifunctional epoxide hydrolase 2-like(LOC100811159)	coding protein	psRNATarget
XM_006577239.2	ncRNA:24   UC-AGGAAUAUUUAAUACAAACAAA   1   ||-|*|||||=*||||||||||||| targets:1064   AGCUGCUUAUGUAUUAUGUUUGUUU   1088 Target Full Sequence	2.0	PREDICTED: Glycine max GRF1-interacting factor 1-like (LOC100801134), transcript variant X1, mRNA	GRF1-interacting factor 1-like(LOC100801134)	coding protein	psRNATarget
XM_003521714.3	ncRNA:24   UC-AGGAAUAUUUAAUACAAACAAA   1   ||-|*|||||=*||||||||||||| targets:1018   AGCUGCUUAUGUAUUAUGUUUGUUU   1042 Target Full Sequence	2.0	PREDICTED: Glycine max GRF1-interacting factor 1-like (LOC100801134), transcript variant X2, mRNA	GRF1-interacting factor 1-like(LOC100801134)	coding protein	psRNATarget
XM_006577240.2	ncRNA:24   UC-AGGAAUAUUUAAUACAAACAAA   1   ||-|*|||||=*||||||||||||| targets:862   AGCUGCUUAUGUAUUAUGUUUGUUU   886 Target Full Sequence	2.0	PREDICTED: Glycine max GRF1-interacting factor 1-like (LOC100801134), transcript variant X3, mRNA	GRF1-interacting factor 1-like(LOC100801134)	coding protein	psRNATarget
XM_006577241.2	ncRNA:24   UC-AGGAAUAUUUAAUACAAACAAA   1   ||-|*|||||=*||||||||||||| targets:852   AGCUGCUUAUGUAUUAUGUUUGUUU   876 Target Full Sequence	2.0	PREDICTED: Glycine max GRF1-interacting factor 1-like (LOC100801134), transcript variant X4, mRNA	GRF1-interacting factor 1-like(LOC100801134)	coding protein	psRNATarget
XM_003549920.3	ncRNA:24   UCAGGAAUAUUUAAUACAAACAAA   1   =*||=||||=||||||||||*||| targets:1757   GAUCUUUAUGAAUUAUGUUUUUUU   1780 Target Full Sequence	2.5	PREDICTED: Glycine max glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic (LOC100792088), mRNA	glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic(LOC100792088)	coding protein	psRNATarget