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BaseInfo

ncRNA ID	novel_gma_miR1963
Species	Glycine max
Class	miRNA
Genome position	Chr3:16825477-16825702 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1292924
Length	24
Mature sequence(if miRNA)	203 - AAUUGGAUGUUGACUGUUACAAAG - 226
Stem-loop(if miRNA)	--                   CA   GA              A       A  C        A      AU                     UAAAUGAAAACAACA   -  -      C   AAUUGGAUGUUGACUGUUA  AAG  AUGUUGGCUGCCAC UGUCACG UC UAUUGGAU AUGACU  CACAUGUCAUGUUCUGAUUGG               AUG CA UUUCAU U   |||||||||||||||||||  |||  |||||||||||||| ||||||| || |||||||| ||||||  |||||||||||||||||||||               ||| || |||||| U   UUAACCUGUAACUGACAAU  UUC  UGCAACUGACGGUG ACAGUGU AG AUAACUUA UACUGA  GUGUACAGUACAAGACUAACC               UAC GU AAGGUA U UG                   CG   AC              C       A  A        C      CG                     ---------------   A  U      C
Stem-loop sequence	AAUUGGAUGUUGACUGUUACAAAGGAAUGUUGGCUGCCACAUGUCACGAUCCUAUUGGAUAAUGACUAUCACAUGUCAUGUUCUGAUUGGUAAAUGAAAACAACAAUGCAUUUCAUCUUUCAUGGAAUUGACAUCCAAUCAGAACAUGACAUGUGGCAGUCAUCAUUCAAUAAGAAUGUGACACGUGGCAGUCAACGUCACUUGCUAACAGUCAAUGUCCAAUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006598012.2	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   =|***||||||||||||||||||| targets:315   UUAAUUAACAGUCAACAUCCAAUU   338 Target Full Sequence	0.0	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like (LOC100810110), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like(LOC100810110)	coding protein	psRNATarget
HI410445.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||***||||=|||||||||||||| targets:212   CUCGNUAACGGUCAACAUCCAAUU   235 Target Full Sequence	1.0	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||***||||=|||||||||||||| targets:212   CUCGNUAACGGUCAACAUCCAAUU   235 Target Full Sequence	1.0	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
JB170906.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||***||||=|||||||||||||| targets:212   CUCGNUAACGGUCAACAUCCAAUU   235 Target Full Sequence	1.0	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||||||||||*|||||=||||||| targets:235   CUUUGUAACAAUCAACGUCCAAUU   258 Target Full Sequence	2.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
JB170936.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||||||||||*|||||=||||||| targets:235   CUUUGUAACAAUCAACGUCCAAUU   258 Target Full Sequence	2.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
HI410475.1	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||||||||||*|||||=||||||| targets:235   CUUUGUAACAAUCAACGUCCAAUU   258 Target Full Sequence	2.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||||||||||*|||||=||||||| targets:1644   CUUUGUAACAAUCAACGUCCAAUU   1667 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:24   GAAACAUUGUCAGUUGUAGGUUAA   1   ||||||||||*|||||=||||||| targets:1656   CUUUGUAACAAUCAACGUCCAAUU   1679 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget