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BaseInfo

ncRNA ID	novel_gma_miR1955
Species	Glycine max
Class	miRNA
Genome position	Chr5:2003959-2004094 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451650;SRR1451653;SRR1295531;SRR1451606;SRR1451607
Length	24
Mature sequence(if miRNA)	1 - AUUGGUUAGAAUUUAUUGAAAAUC - 24
Stem-loop(if miRNA)	--                         CC       A  A     C       U     AUAAA  AG   AUUGGUUAGAAUUUAUUGAAAAUCA  AAUUUUG UA GUUUU UUUCUCA UUAAU     UC  G   |||||||||||||||||||||||||  ||||||| || ||||| ||||||| |||||     ||   UAACCAAUCUUAAAUAAUUUUUAGU  UUAAAAC AU CAAAA AAAGAGU AAUUA     AG  A AC                         AA       C  C     U       U     CAAAG  AG
Stem-loop sequence	AUUGGUUAGAAUUUAUUGAAAAUCACCAAUUUUGAUAAGUUUUCUUUCUCAUUUAAUAUAAAUCAGGAGAGAGAAACAUUAAUUGAGAAAUAAAACCUACCAAAAUUAAUGAUUUUUAAUAAAUUCUAACCAAUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003548792.3	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *=||||=||||||||=|||||||| targets:1217   AGUUUUUAAUAAAUUUUAACCAAU   1240 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100804614 (LOC100804614), mRNA	uncharacterized LOC100804614(LOC100804614)	coding protein	psRNATarget
XM_014773918.1	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *=||||=||||||||=|||||||| targets:1790   AGUUUUUAAUAAAUUUUAACCAAU   1813 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802202 (LOC100802202), transcript variant X2, mRNA	uncharacterized LOC100802202(LOC100802202)	coding protein	psRNATarget
XM_014773920.1	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *=||||=||||||||=|||||||| targets:2647   AGUUUUUAAUAAAUUUUAACCAAU   2670 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802202 (LOC100802202), transcript variant X4, mRNA	uncharacterized LOC100802202(LOC100802202)	coding protein	psRNATarget
XM_014773917.1	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *=||||=||||||||=|||||||| targets:2745   AGUUUUUAAUAAAUUUUAACCAAU   2768 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100802202 (LOC100802202), transcript variant X1, mRNA	uncharacterized LOC100802202(LOC100802202)	coding protein	psRNATarget
XM_003524824.3	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *||*||||||*|||*||||||||| targets:440   AAUCUUCAAUCAAUGCUAACCAAU   463 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100786682 (LOC100786682), transcript variant X1, mRNA	uncharacterized LOC100786682(LOC100786682)	coding protein	psRNATarget
XM_003531119.3	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   *||*||||||*|||*||||||||| targets:386   AAUCUUCAAUCAAUGCUAACCAAU   409 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100804600 (LOC100804600), mRNA	uncharacterized LOC100804600(LOC100804600)	coding protein	psRNATarget
XM_006605956.2	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   ||||*||*||*||||||||||||* targets:1218   GAUUGUCUAUCAAUUCUAACCAAG   1241 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 26 (LOC100789002), transcript variant X3, mRNA	cysteine-rich receptor-like protein kinase 26(LOC100789002)	coding protein	psRNATarget
XM_014772577.1	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   ||||*||*||*||||||||||||* targets:1092   GAUUGUCUAUCAAUUCUAACCAAG   1115 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 26 (LOC100789002), transcript variant X2, mRNA	cysteine-rich receptor-like protein kinase 26(LOC100789002)	coding protein	psRNATarget
XM_006605955.1	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   ||||*||*||*||||||||||||* targets:1218   GAUUGUCUAUCAAUUCUAACCAAG   1241 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 26 (LOC100789002), transcript variant X1, mRNA	cysteine-rich receptor-like protein kinase 26(LOC100789002)	coding protein	psRNATarget
XM_006605954.2	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   ||||*||*||*||||||||||||* targets:1348   GAUUGUCUAUCAAUUCUAACCAAG   1371 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 10 (LOC100787936), mRNA	cysteine-rich receptor-like protein kinase 10(LOC100787936)	coding protein	psRNATarget
XM_003535618.3	ncRNA:24   CUAAAAGUUAUUUAAGAUUGGUUA   1   ||||*||*||*||||||||||||* targets:1408   GAUUGUCUAUCAAUUCUAACCAAG   1431 Target Full Sequence	3.0	PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 26 (LOC100789471), mRNA	cysteine-rich receptor-like protein kinase 26(LOC100789471)	coding protein	psRNATarget