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BaseInfo

ncRNA ID novel_gma_miR1954
Species Glycine max
Class miRNA
Genome position Chr1:41049288-41049381 [-]
Reference genome Glycine_max_v2.0
Source SRR1451650;SRR1451658;SRR1451606
Length 24
Mature sequence(if miRNA) 71 - AUUUUGAAUUUGAAUUUUGAACCU - 94
Stem-loop(if miRNA) ---A                UG ACCUA  AUCGAUUACCGGAUGUUUG
    UUUUGAAUUUGAAUUU  A     UA                   U
    ||||||||||||||||  |     ||                   A
    AAAACUUAAACUUAAA  U     UC                   A
ACUG                GU ----C  AAAGCAACGACCAUUAGCU
Stem-loop sequence AUUUUGAAUUUGAAUUUUGAACCUAUAAUCGAUUACCGGAUGUUUGUAAUCGAUUACCAGCAACGAAACUCUUGAAAUUCAAAUUCAAAAGUCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003516345.3
ncRNA:24   UCCA---AGUUUUAAGUUUAAGUUUUA   1
  |||*---||||||||||||*|||||||
targets:189   AGGAAAAUCAAAAUUCAAAAUCAAAAU   215

1.5 PREDICTED: Glycine max protein trichome birefringence-like 35 (LOC100789791), mRNA protein trichome birefringence-like 35(LOC100789791) coding protein psRNATarget
XM_003518412.3
ncRNA:24   UCCAAGUUUUAAGUUUAAGUUUUA   1
  ****|||||||||||||||*||||
targets:134   UAAAUCAAAAUUCAAAUUCCAAAU   157

1.5 PREDICTED: Glycine max BTB/POZ and MATH domain-containing protein 4 (LOC100806769), mRNA BTB/POZ and MATH domain-containing protein 4(LOC100806769) coding protein psRNATarget