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BaseInfo

ncRNA ID novel_gma_miR1947
Species Glycine max
Class miRNA
Genome position Chr4:10467907-10467952 [+]
Reference genome Glycine_max_v2.0
Source SRR1451650
Length 22
Mature sequence(if miRNA) 25 - CUUUCUAAGACGGUCGUUAGCU - 46
Stem-loop(if miRNA) --                    U
  CUAAUGACCGUCUUAGAAAG U
  ||||||||||||||||||||
  GAUUGCUGGCAGAAUCUUUC A
UC                    C
Stem-loop sequence CUAAUGACCGUCUUAGAAAGUUACCUUUCUAAGACGGUCGUUAGCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014775518.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUUC   1
  |*=*||=*||||||||||||||
targets:737   AUUGAAUAACCGUCUUAGAAAG   758

3.0 PREDICTED: Glycine max methylsterol monooxygenase 1-1-like (LOC100802435), mRNA methylsterol monooxygenase 1-1-like(LOC100802435) coding protein psRNATarget
XM_014764114.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUUC   1
  ****=||*||||||||||||||
targets:2086   UAGAGACAACCGUCUUAGAAAG   2107

3.0 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X6, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764113.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUUC   1
  ****=||*||||||||||||||
targets:2094   UAGAGACAACCGUCUUAGAAAG   2115

3.0 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X2, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_006591004.2
ncRNA:22   UCGAUUGCUGGCAGAAUCUUUC   1
  ****=||*||||||||||||||
targets:2150   UAGAGACAACCGUCUUAGAAAG   2171

3.0 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X5, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget
XM_014764112.1
ncRNA:22   UCGAUUGCUGGCAGAAUCUUUC   1
  ****=||*||||||||||||||
targets:2166   UAGAGACAACCGUCUUAGAAAG   2187

3.0 PREDICTED: Glycine max somatic embryogenesis receptor kinase 1-like (LOC100777573), transcript variant X1, mRNA somatic embryogenesis receptor kinase 1-like(LOC100777573) coding protein psRNATarget