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BaseInfo

ncRNA ID novel_gma_miR1938
Species Glycine max
Class miRNA
Genome position Chr18:7946228-7946445 [-]
Reference genome Glycine_max_v2.0
Source SRR1294482;SRR1295517;SRR1295518;SRR1295525;SRR1295527;SRR1292928;SRR1451622;SRR1451624
Length 24
Mature sequence(if miRNA) 1 - AAGAAUCAUGAAACUAUAGGGACC - 24
Stem-loop(if miRNA) --        -              UC         UC    A       G    A      A             C        ----            C  A  CU  G
  UCCCUAUA UUUUAUGGUUCUUA  UUUUUAGUU  UAUA UUUAAAA UGGU UUUUUA UCCCUAUAGUUUA AUUUUAAU    UCUCUUUUAGUC CU UA  UU A
  |||||||| ||||||||||||||  |||||||||  |||| ||||||| |||| |||||| ||||||||||||| ||||||||    |||||||||||| || ||  ||
  AGGGAUAU AAAGUACUAAGAAU  AAAAAUCAG  AUAU AAAUUUU ACUA AAAAAU AGGGAUAUUAAAU UAAAAUUA    AGAGAAAAUCAG GA AU  AA A
CC        C              GA         GA    C       A    C      C             A        AUUA            A  C  -U  A
Stem-loop sequence UCCCUAUAUUUUAUGGUUCUUAUCUUUUUAGUUUCUAUAAUUUAAAAGUGGUAUUUUUAAUCCCUAUAGUUUACAUUUUAAUUCUCUUUUAGUCCCUAUACUUUGAAAAAUUACAGAGACUAAAAGAGAAUUAAUUAAAAUAUAAAUUAUAGGGACUAAAAACAUCAAUUUUAAACUAUAAGGACUAAAAAAGUAAGAAUCAUGAAACUAUAGGGACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006579499.2
ncRNA:24   CCAGGGAUAUCAAAGUACUAAGAA   1
  **||==||||*|||||||||||||
targets:831   UUUCUUUAUAUUUUCAUGAUUCUU   854

2.0 PREDICTED: Glycine max uncharacterized LOC102661934 (LOC102661934), mRNA uncharacterized LOC102661934(LOC102661934) coding protein psRNATarget