ncRNA ID | novel_gma_miR1938 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:7946228-7946445 [-] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1294482;SRR1295517;SRR1295518;SRR1295525;SRR1295527;SRR1292928;SRR1451622;SRR1451624 |
Length | 24 |
Mature sequence(if miRNA) | 1 - AAGAAUCAUGAAACUAUAGGGACC - 24 |
Stem-loop(if miRNA) |
--        -              UC         UC    A       G    A      A             C        ----            C  A  CU  G   UCCCUAUA UUUUAUGGUUCUUA  UUUUUAGUU  UAUA UUUAAAA UGGU UUUUUA UCCCUAUAGUUUA AUUUUAAU    UCUCUUUUAGUC CU UA  UU A   |||||||| ||||||||||||||  |||||||||  |||| ||||||| |||| |||||| ||||||||||||| ||||||||    |||||||||||| || ||  ||   AGGGAUAU AAAGUACUAAGAAU  AAAAAUCAG  AUAU AAAUUUU ACUA AAAAAU AGGGAUAUUAAAU UAAAAUUA    AGAGAAAAUCAG GA AU  AA A CC        C              GA         GA    C       A    C      C             A        AUUA            A  C  -U  A |
Stem-loop sequence | UCCCUAUAUUUUAUGGUUCUUAUCUUUUUAGUUUCUAUAAUUUAAAAGUGGUAUUUUUAAUCCCUAUAGUUUACAUUUUAAUUCUCUUUUAGUCCCUAUACUUUGAAAAAUUACAGAGACUAAAAGAGAAUUAAUUAAAAUAUAAAUUAUAGGGACUAAAAACAUCAAUUUUAAACUAUAAGGACUAAAAAAGUAAGAAUCAUGAAACUAUAGGGACC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006579499.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC102661934 (LOC102661934), mRNA | uncharacterized LOC102661934(LOC102661934) | coding protein | psRNATarget |