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BaseInfo

ncRNA ID novel_gma_miR1928
Species Glycine max
Class miRNA
Genome position Chr2:462493-462587 [-]
Reference genome Glycine_max_v2.0
Source SRR1451650;SRR1451652;SRR1451654;SRR1451655;SRR1451658;SRR1451660;SRR1451661;SRR1451662;SRR1451663;SRR1451664;SRR1451609
Length 24
Mature sequence(if miRNA) 1 - CUAUAAGGACCAAAUGAGUAAUUU - 24
Stem-loop(if miRNA) --         CUA    C              A      AUU   CCU
  AUUACUCAU   GUCC UAUAGUUGCACAAA UUUACC   UAG   C
  |||||||||   |||| |||||||||||||| ||||||   |||
  UAAUGAGUA   CAGG AUAUCAAUGUGUUU AAAUGG   AUC   U
UU         AAC    A              G      ---   ACA
Stem-loop sequence AUUACUCAUCUAGUCCCUAUAGUUGCACAAAAUUUACCAUUUAGCCUCUACACUAGGUAAAGUUUGUGUAACUAUAAGGACCAAAUGAGUAAUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762229.1
ncRNA:24   UUUAAUGAGUAAACCAGGAAUAUC   1
  *|||||||||||||||||||=|||
targets:1800   UAAUUACUCAUUUGGUCCUUGUAG   1823

1.5 PREDICTED: Glycine max aldose 1-epimerase-like (LOC102668851), transcript variant X2, mRNA aldose 1-epimerase-like(LOC102668851) coding protein psRNATarget
XM_014762228.1
ncRNA:24   UUUAAUGAGUAAACCAGGAAUAUC   1
  *|||||||||||||||||||=|||
targets:1851   UAAUUACUCAUUUGGUCCUUGUAG   1874

1.5 PREDICTED: Glycine max aldose 1-epimerase-like (LOC102668851), transcript variant X1, mRNA aldose 1-epimerase-like(LOC102668851) coding protein psRNATarget
AK286453.1
ncRNA:24   UUUAAUGAGUAAACCAGGAAUAUC   1
  *|||||||||||||||||||||*|
targets:356   UAAUUACUCAUUUGGUCCUUAUUG   379

1.5 Glycine max cDNA, clone: GMFL01-28-L19 NA coding protein psRNATarget
XM_006593598.2
ncRNA:24   UUUAAUGAGUAAACCAGGAAUAUC   1
  =||*||=|*||||||||||||||*
targets:2037   GAAGUAUUAAUUUGGUCCUUAUAA   2060

3.0 PREDICTED: Glycine max uncharacterized LOC102665456 (LOC102665456), transcript variant X2, mRNA uncharacterized LOC102665456(LOC102665456) coding protein psRNATarget
XM_006593599.2
ncRNA:24   UUUAAUGAGUAAACCAGGAAUAUC   1
  =||*||=|*||||||||||||||*
targets:2049   GAAGUAUUAAUUUGGUCCUUAUAA   2072

3.0 PREDICTED: Glycine max uncharacterized LOC102665456 (LOC102665456), transcript variant X3, mRNA uncharacterized LOC102665456(LOC102665456) coding protein psRNATarget