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BaseInfo

ncRNA ID novel_gma_miR1915
Species Glycine max
Class miRNA
Genome position Chr1:52981540-52981616 [+]
Reference genome Glycine_max_v2.0
Source SRR1451650;SRR1451655
Length 24
Mature sequence(if miRNA) 1 - UUAAAUGGAUUGGAUCUUAAAUCU - 24
Stem-loop(if miRNA) --                         UAU    A   U
  UUAAAUGGAUUGGAUCUUAAAUCUA   UUGU UUU U
  |||||||||||||||||||||||||   |||| |||
  AAUUUACUUAACCUAGAAUUUAGAU   AAUA AAA U
UG                         -UU    A   U
Stem-loop sequence UUAAAUGGAUUGGAUCUUAAAUCUAUAUUUGUAUUUUUUUAAAAAUAAUUUAGAUUUAAGAUCCAAUUCAUUUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762028.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:3812   GGAUUUAAAAUCCAAACCAUUUAA   3835

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_014762026.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:4151   GGAUUUAAAAUCCAAACCAUUUAA   4174

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_014762027.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:5392   GGAUUUAAAAUCCAAACCAUUUAA   5415

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_006587056.2
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:5392   GGAUUUAAAAUCCAAACCAUUUAA   5415

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget