Search result

BaseInfo

ncRNA ID	novel_gma_miR1901
Species	Glycine max
Class	miRNA
Genome position	Chr1:48293956-48293999 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451650;SRR1451653;SRR1451663;SRR1451607
Length	21
Mature sequence(if miRNA)	1 - UUCCAUUUUCUGAAAACUGUU - 21
Stem-loop(if miRNA)	--   -C     C      C  U   UUC  AUUUU UGAAAA UG U   |||  ||||| |||||| ||   AAG  UAGAA ACUUUU AC U UU   UU     A      -  U
Stem-loop sequence	UUCCAUUUUCUGAAAACUGUUUUCAUUUUCAAAAGAUUUGAAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006606527.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   *=|*||||||||||||||||| targets:878   UGCUGUUUUCAGAAAAUGGAA   898 Target Full Sequence	1.0	PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.1-like (LOC100812906), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 7.1-like(LOC100812906)	coding protein	psRNATarget
XM_003555596.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   *=|*||||||||||||||||| targets:977   UGCUGUUUUCAGAAAAUGGAA   997 Target Full Sequence	1.0	PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.1-like (LOC100812906), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 7.1-like(LOC100812906)	coding protein	psRNATarget
XM_014775064.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:584   AGGAGUUGUCAGAAAAUGGAA   604 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC106798472), mRNA	U-box domain-containing protein 14-like(LOC106798472)	coding protein	psRNATarget
XM_006603157.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:608   AGGAGUUGUCAGAAAAUGGAA   628 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC102662441), mRNA	U-box domain-containing protein 14-like(LOC102662441)	coding protein	psRNATarget
XM_006582721.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:704   AGGAGUUGUCAGAAAAUGGAA   724 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 12-like (LOC102659717), mRNA	U-box domain-containing protein 12-like(LOC102659717)	coding protein	psRNATarget
XM_014775977.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:710   AGGAGUUGUCAGAAAAUGGAA   730 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC100807047), mRNA	U-box domain-containing protein 14-like(LOC100807047)	coding protein	psRNATarget
XM_003550921.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:1046   AGGAGUUGUCAGAAAAUGGAA   1066 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC100798797), mRNA	U-box domain-containing protein 14-like(LOC100798797)	coding protein	psRNATarget
XM_014775063.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:1136   AGGAGUUGUCAGAAAAUGGAA   1156 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC106798471), mRNA	U-box domain-containing protein 14-like(LOC106798471)	coding protein	psRNATarget
XM_003535472.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:2159   AGGAGUUGUCAGAAAAUGGAA   2179 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14 (LOC100797201), mRNA	U-box domain-containing protein 14(LOC100797201)	coding protein	psRNATarget
XM_003556197.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   |=*||||*||||||||||||| targets:2181   AGGAGUUGUCAGAAAAUGGAA   2201 Target Full Sequence	2.0	PREDICTED: Glycine max U-box domain-containing protein 14-like (LOC100777452), mRNA	U-box domain-containing protein 14-like(LOC100777452)	coding protein	psRNATarget
FJ014754.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   =*=|*|||||||||||||||| targets:1099   GUUAAUUUUCAGAAAAUGGAA   1119 Target Full Sequence	2.0	Glycine max clone cw72 NAK-type protein kinase mRNA, complete cds	NA	coding protein	psRNATarget
NM_001251769.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   =*=|*|||||||||||||||| targets:1099   GUUAAUUUUCAGAAAAUGGAA   1119 Target Full Sequence	2.0	Glycine max NAK-type protein kinase (LOC100305404), mRNA	NAK-type protein kinase(LOC100305404)	coding protein	psRNATarget
XM_006584973.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=||||||||*||||||||| targets:159   AAUAGUUUUCAAAAAAUGGAA   179 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100775548 (LOC100775548), mRNA	uncharacterized LOC100775548(LOC100775548)	coding protein	psRNATarget
XM_006589732.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   *=|*|||||=||||||||||| targets:971   UGCUGUUUUUAGAAAAUGGAA   991 Target Full Sequence	2.5	PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.1-like (LOC100779512), transcript variant X2, mRNA	protein NRT1/ PTR FAMILY 7.1-like(LOC100779512)	coding protein	psRNATarget
XM_006589731.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   *=|*|||||=||||||||||| targets:998   UGCUGUUUUUAGAAAAUGGAA   1018 Target Full Sequence	2.5	PREDICTED: Glycine max protein NRT1/ PTR FAMILY 7.1-like (LOC100779512), transcript variant X1, mRNA	protein NRT1/ PTR FAMILY 7.1-like(LOC100779512)	coding protein	psRNATarget
XM_006575382.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   =|||||*|||||||||*|||| targets:1583   GACAGUAUUCAGAAAAGGGAA   1603 Target Full Sequence	2.5	PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 10-like (LOC100779316), mRNA	CBL-interacting serine/threonine-protein kinase 10-like(LOC100779316)	coding protein	psRNATarget
BT093722.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:360   AAUUGUUUUCAGAAAAUGGAU   380 Target Full Sequence	3.0	Soybean clone JCVI-FLGm-17N23 unknown mRNA	NA	coding protein	psRNATarget
AK245182.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1263   AAUUGUUUUCAGAAAAUGGAU   1283 Target Full Sequence	3.0	Glycine max cDNA, clone: GMFL01-23-B22	NA	coding protein	psRNATarget
XM_003542295.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1283   AAUUGUUUUCAGAAAAUGGAU   1303 Target Full Sequence	3.0	PREDICTED: Glycine max protein phosphatase 2C 77-like (LOC100789207), transcript variant X2, mRNA	protein phosphatase 2C 77-like(LOC100789207)	coding protein	psRNATarget
XM_003549153.3	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1305   AAUUGUUUUCAGAAAAUGGAU   1325 Target Full Sequence	3.0	PREDICTED: Glycine max protein phosphatase 2C 56 (LOC100802159), transcript variant X1, mRNA	protein phosphatase 2C 56(LOC100802159)	coding protein	psRNATarget
XM_006593872.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1342   AAUUGUUUUCAGAAAAUGGAU   1362 Target Full Sequence	3.0	PREDICTED: Glycine max protein phosphatase 2C 77-like (LOC100789207), transcript variant X1, mRNA	protein phosphatase 2C 77-like(LOC100789207)	coding protein	psRNATarget
XM_014769811.1	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1364   AAUUGUUUUCAGAAAAUGGAU   1384 Target Full Sequence	3.0	PREDICTED: Glycine max protein phosphatase 2C 56 (LOC100802159), transcript variant X2, mRNA	protein phosphatase 2C 56(LOC100802159)	coding protein	psRNATarget
XM_006593874.2	ncRNA:21   UUGUCAAAAGUCUUUUACCUU   1   ||=*||||||||||||||||* targets:1379   AAUUGUUUUCAGAAAAUGGAU   1399 Target Full Sequence	3.0	PREDICTED: Glycine max protein phosphatase 2C 77-like (LOC100789207), transcript variant X3, mRNA	protein phosphatase 2C 77-like(LOC100789207)	coding protein	psRNATarget