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BaseInfo

ncRNA ID novel_gma_miR1897
Species Glycine max
Class miRNA
Genome position Chr11:7307273-7307341 [-]
Reference genome Glycine_max_v2.0
Source SRR1451650;SRR1451655;SRR1451662;SRR835763
Length 21
Mature sequence(if miRNA) 49 - UCUGAAUUGAGCUGAGUAGAU - 69
Stem-loop(if miRNA) --      UU A C       A  -UG  G  AAA
  UCUGAA  G G UGAGUAG UA   GU AG   A
  ||||||  | | ||||||| ||   || ||   C
  GGACUU  C C ACUCGUC AU   CG UC   A
UU      UU A -       C  CAA  G  GGU
Stem-loop sequence UCUGAAUUGAGCUGAGUAGAUAUGGUGAGAAAACAUGGCUGGCAACUACCUGCUCACACUUUUCAGGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001255958.2
ncRNA:21   UAGAUGAGUCGAGUUAAGUCU   1
  |||*|=|=|||||||||||||
targets:194   AUCCAUUUAGCUCAAUUCAGA   214

3.0 Glycine max 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like (LOC100812541), mRNA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic-like(LOC100812541) coding protein psRNATarget
BT096702.1
ncRNA:21   UAGAUGAGUCGAGUUAAGUCU   1
  |||*|=|=|||||||||||||
targets:196   AUCCAUUUAGCUCAAUUCAGA   216

3.0 Soybean clone JCVI-FLGm-21E19 unknown mRNA NA coding protein psRNATarget
XM_003543282.3
ncRNA:21   UAGAUGAGUCGAGUUAAGUCU   1
  |*|*|=|=|||||||||||||
targets:199   AACCAUUUAGCUCAAUUCAGA   219

3.0 PREDICTED: Glycine max 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like (LOC100779074), mRNA 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplastic/chromoplastic-like(LOC100779074) coding protein psRNATarget