Search result

BaseInfo

ncRNA ID	novel_gma_miR1895
Species	Glycine max
Class	miRNA
Genome position	Chr18:9508658-9508717 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451650
Length	22
Mature sequence(if miRNA)	1 - UUUCUAAAUUAGUUUGACUAUU - 22
Stem-loop(if miRNA)	--    U     AG       -      AUA   UUUC AAAUU  UUUGACU AUUUAG   U   |||| |||||  ||||||| ||||||   AAAG UUUAA  AAAUUGG UAAAUC   A CC    -     CA       C      AAA
Stem-loop sequence	UUUCUAAAUUAGUUUGACUAUUUAGAUAUAAAACUAAAUCGGUUAAAACAAUUUGAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006604625.2	ncRNA:22   UUAUCAGUUUGAUUAAAUCUUU   1   ||||||||||||=||||||||| targets:4585   AAUAGUCAAACUGAUUUAGAAA   4606 Target Full Sequence	1.5	PREDICTED: Glycine max pre-mRNA-splicing factor prp12-like (LOC100799711), transcript variant X3, mRNA	pre-mRNA-splicing factor prp12-like(LOC100799711)	coding protein	psRNATarget
XM_006604624.2	ncRNA:22   UUAUCAGUUUGAUUAAAUCUUU   1   ||||||||||||=||||||||| targets:4594   AAUAGUCAAACUGAUUUAGAAA   4615 Target Full Sequence	1.5	PREDICTED: Glycine max pre-mRNA-splicing factor prp12-like (LOC100799711), transcript variant X2, mRNA	pre-mRNA-splicing factor prp12-like(LOC100799711)	coding protein	psRNATarget
XM_006604623.2	ncRNA:22   UUAUCAGUUUGAUUAAAUCUUU   1   ||||||||||||=||||||||| targets:4600   AAUAGUCAAACUGAUUUAGAAA   4621 Target Full Sequence	1.5	PREDICTED: Glycine max pre-mRNA-splicing factor prp12-like (LOC100799711), transcript variant X1, mRNA	pre-mRNA-splicing factor prp12-like(LOC100799711)	coding protein	psRNATarget
XM_006582735.2	ncRNA:22   UUAUCAGUUUGAUUAAAUCUUU   1   |*||*|||||||||||*||||| targets:622   ACUAUUCAAACUAAUUGAGAAA   643 Target Full Sequence	2.5	PREDICTED: Glycine max dirigent protein 23-like (LOC102662722), mRNA	dirigent protein 23-like(LOC102662722)	coding protein	psRNATarget