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BaseInfo

ncRNA ID	novel_gma_miR1890
Species	Glycine max
Class	miRNA
Genome position	Chr18:56413556-56413633 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451650
Length	23
Mature sequence(if miRNA)	56 - CCAUUAACUAAUUUGUAGAAGCU - 78
Stem-loop(if miRNA)	--      A            A CU       ---A   C   CCAUUA CUAAUUUGUAGA G  CUCUCAU    UAG U   |||||| |||||||||||| |  |||||||    ||| U   GGUAAU GAUUAAACAUCU C  GAGAGUA    AUC C UU      C            G AG       GAAA   U
Stem-loop sequence	CCAUUAACUAAUUUGUAGAAGCUCUCUCAUAUAGCUUCUCUAAAAGAUGAGAGGACGUCUACAAAUUAGCUAAUGGUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014763080.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||||||||||||||||*|||||| targets:3632   AGCUUCUACAAAUUAGCUAAUGG   3654 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X6, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763076.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||||||||||||||||*|||||| targets:3737   AGCUUCUACAAAUUAGCUAAUGG   3759 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X2, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763077.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||||||||||||||||*|||||| targets:3868   AGCUUCUACAAAUUAGCUAAUGG   3890 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X3, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763079.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||||||||||||||||*|||||| targets:3880   AGCUUCUACAAAUUAGCUAAUGG   3902 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X5, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_014763075.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||||||||||||||||*|||||| targets:3969   AGCUUCUACAAAUUAGCUAAUGG   3991 Target Full Sequence	1.5	PREDICTED: Glycine max pentatricopeptide repeat-containing protein At3g49740-like (LOC100818021), transcript variant X1, mRNA	pentatricopeptide repeat-containing protein At3g49740-like(LOC100818021)	coding protein	psRNATarget
XM_006603606.2	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||=|||||||||||||*|||||| targets:1529   AGUUUCUACAAAUUAGCUAAUGG   1551 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X1, mRNA	uncharacterized LOC100500460(LOC100500460)	coding protein	psRNATarget
XM_006603608.2	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   ||=|||||||||||||*|||||| targets:1539   AGUUUCUACAAAUUAGCUAAUGG   1561 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100500460 (LOC100500460), transcript variant X3, mRNA	uncharacterized LOC100500460(LOC100500460)	coding protein	psRNATarget
XM_014773594.1	ncRNA:23   UCGAAGAUGUUUAAUCAAUUACC   1   |*=||||||||||||*||||||* targets:174   AAUUUCUACAAAUUAAUUAAUGU   196 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC106798052 (LOC106798052), mRNA	uncharacterized LOC106798052(LOC106798052)	coding protein	psRNATarget
BT095688.1	ncRNA:23   UCG--------AAGAUGUUUAAUCAAUUACC   1   |||--------|||||||*|||||||||||* targets:1010   AGCCACUUGUGUUCUACAUAUUAGUUAAUGU   1040 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-19B16 unknown mRNA	NA	coding protein	psRNATarget
XM_003521505.3	ncRNA:23   UCG--------AAGAUGUUUAAUCAAUUACC   1   |||--------|||||||*|||||||||||* targets:1048   AGCCACUUGUGUUCUACAUAUUAGUUAAUGU   1078 Target Full Sequence	2.5	PREDICTED: Glycine max dephospho-CoA kinase (LOC100782228), transcript variant X2, mRNA	dephospho-CoA kinase(LOC100782228)	coding protein	psRNATarget
XM_003521506.3	ncRNA:23   UCG--------AAGAUGUUUAAUCAAUUACC   1   |||--------|||||||*|||||||||||* targets:1078   AGCCACUUGUGUUCUACAUAUUAGUUAAUGU   1108 Target Full Sequence	2.5	PREDICTED: Glycine max dephospho-CoA kinase (LOC100782228), transcript variant X1, mRNA	dephospho-CoA kinase(LOC100782228)	coding protein	psRNATarget
XM_003525187.3	ncRNA:23   UC--GAAGAUGUUUAAUCAAUUACC   1   ||--|*||||||||||||*|||||* targets:1906   AGGACAUCUACAAAUUAGCUAAUGA   1930 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100801179 (LOC100801179), mRNA	uncharacterized LOC100801179(LOC100801179)	coding protein	psRNATarget
XM_014762754.1	ncRNA:23   UC--GAAGAUGUUU-AAUCAAUUACC   1   ||--|*||||||||-||||||||||| targets:1227   AGAACAUCUACAAAAUUAGUUAAUGG   1252 Target Full Sequence	3.0	PREDICTED: Glycine max lipoprotein NlpI (LOC100809261), mRNA	lipoprotein NlpI(LOC100809261)	coding protein	psRNATarget