Search result

BaseInfo

ncRNA ID	novel_gma_miR1888
Species	Glycine max
Class	miRNA
Genome position	Chr17:32464358-32464414 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451650;SRR1451655;SRR1451660;SRR1451661;SRR1451620
Length	22
Mature sequence(if miRNA)	1 - UUAGAAUCGAUGUAGAAGGCCU - 22
Stem-loop(if miRNA)	---U       G   U     GC UUUUU     UAGAAUC AUG AGAAG  C     U     ||||||| ||| |||||  |     U     GUUUUAG UAC UCUUC  G     A GUAC       A   -     UA UGAUG
Stem-loop sequence	UUAGAAUCGAUGUAGAAGGCCUUUUUUUAGUAGUGAUCUUCUCAUAGAUUUUGCAUG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003539359.3	ncRNA:22   UCCGGAAGAUGUAGCUAAGAUU   1   ||*||||||||||||=|||||| targets:2685   AGUCCUUCUACAUCGGUUCUAA   2706 Target Full Sequence	1.5	PREDICTED: Glycine max MLO-like protein 6 (LOC100776714), mRNA	MLO-like protein 6(LOC100776714)	coding protein	psRNATarget
XM_006588741.2	ncRNA:22   UCCGGAAGAUGUAGCUAAGAUU   1   ***=*||||||||||||||||| targets:2873   CACUAUUCUACAUCGAUUCUAA   2894 Target Full Sequence	2.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102670366), transcript variant X2, mRNA	phosphoinositide phosphatase SAC1-like(LOC102670366)	coding protein	psRNATarget
XM_014763017.1	ncRNA:22   UCCGGAAGAUGUAGCUAAGAUU   1   ***=*||||||||||||||||| targets:2969   CACUAUUCUACAUCGAUUCUAA   2990 Target Full Sequence	2.0	PREDICTED: Glycine max phosphoinositide phosphatase SAC1-like (LOC102660101), transcript variant X1, mRNA	phosphoinositide phosphatase SAC1-like(LOC102660101)	coding protein	psRNATarget