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BaseInfo

ncRNA ID novel_gma_miR1885
Species Glycine max
Class miRNA
Genome position Chr14:565030-565084 [-]
Reference genome Glycine_max_v2.0
Source SRR1294482
Length 23
Mature sequence(if miRNA) 1 - GUGGGAUAAGGCUUUGUUGUGGU - 23
Stem-loop(if miRNA) --                         
  CACAACAAAGUCUUAUCCCACUAGGU
  |||||||||||||||||||||||||C
  GUGUUGUUUCGGAAUAGGGUGAUCCA
UG                         
Stem-loop sequence CACAACAAAGUCUUAUCCCACUAGGUCACCUAGUGGGAUAAGGCUUUGUUGUGGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006583322.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*||||||||||||||||||||
targets:2068   ACAACAACAAAGCCUUAUCCCAC   2090

0.0 PREDICTED: Glycine max uncharacterized LOC100797863 (LOC100797863), transcript variant X1, mRNA uncharacterized LOC100797863(LOC100797863) coding protein psRNATarget
XM_006587459.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*||||||||||||||||||||
targets:2020   ACAACAACAAAGCCUUAUCCCAC   2042

0.0 PREDICTED: Glycine max uncharacterized LOC102663636 (LOC102663636), mRNA uncharacterized LOC102663636(LOC102663636) coding protein psRNATarget
XM_014777861.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*||||||||||||||||||||
targets:1962   ACAACAACAAAGCCUUAUCCCAC   1984

0.0 PREDICTED: Glycine max uncharacterized LOC100797863 (LOC100797863), transcript variant X2, mRNA uncharacterized LOC100797863(LOC100797863) coding protein psRNATarget
XM_006578920.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  =|*||||||||||||||||||||
targets:286   GCAACAACAAAGCCUUAUCCCAC   308

0.0 PREDICTED: Glycine max uncharacterized LOC100819473 (LOC100819473), transcript variant X1, mRNA uncharacterized LOC100819473(LOC100819473) coding protein psRNATarget
XM_006578921.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  =|*||||||||||||||||||||
targets:286   GCAACAACAAAGCCUUAUCCCAC   308

0.0 PREDICTED: Glycine max uncharacterized LOC100819473 (LOC100819473), transcript variant X2, mRNA uncharacterized LOC100819473(LOC100819473) coding protein psRNATarget
XM_014770972.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  |**||||||||||||||||||||
targets:2892   AAAACAACAAAGCCUUAUCCCAC   2914

0.0 PREDICTED: Glycine max uncharacterized LOC106797151 (LOC106797151), mRNA uncharacterized LOC106797151(LOC106797151) coding protein psRNATarget
XM_003553510.3
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||||||||||=||||
targets:171   ACAACAACAAAGCCUUAUUCCAC   193

1.5 PREDICTED: Glycine max mannan synthase 1-like (LOC100796175), mRNA mannan synthase 1-like(LOC100796175) coding protein psRNATarget
XM_006585565.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||*||||||||||||
targets:283   ACAACAACAACGCCUUAUCCCAC   305

1.5 PREDICTED: Glycine max uncharacterized LOC100788011 (LOC100788011), transcript variant X1, mRNA uncharacterized LOC100788011(LOC100788011) coding protein psRNATarget
XM_006601167.2
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||*||||||||||||
targets:186   ACAACAACAACGCCUUAUCCCAC   208

1.5 PREDICTED: Glycine max cytosolic Fe-S cluster assembly factor NBP35-like (LOC100777003), transcript variant X2, mRNA cytosolic Fe-S cluster assembly factor NBP35-like(LOC100777003) coding protein psRNATarget
XM_014774865.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||*||||||||||||
targets:1135   ACAACAACAACGCCUUAUCCCAC   1157

1.5 PREDICTED: Glycine max NAD-dependent protein deacylase SRT2-like (LOC100815194), transcript variant X4, mRNA NAD-dependent protein deacylase SRT2-like(LOC100815194) coding protein psRNATarget
BT094865.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||*||||||||||||
targets:77   ACAACAACAACGCCUUAUCCCAC   99

1.5 Soybean clone JCVI-FLGm-6G14 unknown mRNA NA coding protein psRNATarget
XM_014774180.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*|||||||*||||||||||||
targets:791   ACAACAACAACGCCUUAUCCCAC   813

1.5 PREDICTED: Glycine max RNA-directed DNA polymerase homolog (LOC106798202), mRNA RNA-directed DNA polymerase homolog(LOC106798202) coding protein psRNATarget
XM_014764248.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  |**||||||=|||||||||=|||
targets:2523   AGAACAACAGAGCCUUAUCUCAC   2545

2.5 PREDICTED: Glycine max DNA polymerase epsilon catalytic subunit A-like (LOC100778115), mRNA DNA polymerase epsilon catalytic subunit A-like(LOC100778115) coding protein psRNATarget
XM_014772356.1
ncRNA:23   UGGUGUUGUUUCGGAAUAGGGUG   1
  ||*||||||*|*|||||||||||
targets:98   ACAACAACAUAUCCUUAUCCCAC   120

2.5 PREDICTED: Glycine max vacuolar amino acid transporter 1-like (LOC100812006), transcript variant X2, mRNA vacuolar amino acid transporter 1-like(LOC100812006) coding protein psRNATarget
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