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BaseInfo

ncRNA ID novel_gma_miR1878
Species Glycine max
Class miRNA
Genome position Chr16:32971382-32971448 [-]
Reference genome Glycine_max_v2.0
Source SRR1451650
Length 24
Mature sequence(if miRNA) 44 - AACAAAGAUUAUAUUAGGUGAUUU - 67
Stem-loop(if miRNA) --                  U           A
  AACAAAGAUUAUAUUAGG GAUUUGUGCUC A
  |||||||||||||||||| ||||||||||| U
  UUGUUUCUAAUAUAAUCC CUAAACACGAG U
AA                  U           U
Stem-loop sequence AACAAAGAUUAUAUUAGGUGAUUUGUGCUCAAUUUGAGCACAAAUCUCCUAAUAUAAUCUUUGUUAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591280.2
ncRNA:24   UUUA-------GUGGAUUAUAUUAGAAACAA   1
  ||||-------||||*||*||||||||||||
targets:2977   AAAUUCAAGCACACCAAAGAUAAUCUUUGUU   3007

2.5 PREDICTED: Glycine max anaphase-promoting complex subunit 2-like (LOC100785428), transcript variant X2, mRNA anaphase-promoting complex subunit 2-like(LOC100785428) coding protein psRNATarget
XM_006591279.2
ncRNA:24   UUUA-------GUGGAUUAUAUUAGAAACAA   1
  ||||-------||||*||*||||||||||||
targets:2980   AAAUUCAAGCACACCAAAGAUAAUCUUUGUU   3010

2.5 PREDICTED: Glycine max anaphase-promoting complex subunit 2-like (LOC100785428), transcript variant X1, mRNA anaphase-promoting complex subunit 2-like(LOC100785428) coding protein psRNATarget