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BaseInfo

ncRNA ID novel_gma_miR1875
Species Glycine max
Class miRNA
Genome position Chr16:16816767-16816809 [-]
Reference genome Glycine_max_v2.0
Source SRR1451650;SRR1451655;SRR1451658;SRR1451663
Length 22
Mature sequence(if miRNA) 1 - UCAUGGUAGAUUUUUGAGCCCA - 22
Stem-loop(if miRNA) --GC       U   --    A
    CUUAGGA UCU  CAUG A
    ||||||| |||  |||| C
    GAGUUUU AGA  GUAC C
ACCC       U   UG    U
Stem-loop sequence GCCUUAGGAUUCUCAUGAACCUCAUGGUAGAUUUUUGAGCCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006580197.2
ncRNA:22   ACCCGAGUUUUUAGAUGGUACU   1
  |**|||||=|||*|||||||||
targets:142   UCAGCUCAGAAACCUACCAUGA   163

2.5 PREDICTED: Glycine max uncharacterized LOC100790782 (LOC100790782), transcript variant X2, mRNA uncharacterized LOC100790782(LOC100790782) coding protein psRNATarget
XM_006585201.2
ncRNA:22   ACCCGAGUUUUUAGAUGGUACU   1
  |**|||||=|||*|||||||||
targets:108   UCAGCUCAGAAACCUACCAUGA   129

2.5 PREDICTED: Glycine max uncharacterized LOC100809936 (LOC100809936), transcript variant X2, mRNA uncharacterized LOC100809936(LOC100809936) coding protein psRNATarget
XM_003531294.3
ncRNA:22   ACCCGAGUUUUUAGAUGGUACU   1
  |**|||||=|||*|||||||||
targets:104   UCAGCUCAGAAACCUACCAUGA   125

2.5 PREDICTED: Glycine max uncharacterized LOC100809936 (LOC100809936), transcript variant X1, mRNA uncharacterized LOC100809936(LOC100809936) coding protein psRNATarget
XM_003524999.3
ncRNA:22   ACCCGAGUUUUUAGAUGGUACU   1
  |**|||||=|||*|||||||||
targets:141   UCAGCUCAGAAACCUACCAUGA   162

2.5 PREDICTED: Glycine max uncharacterized LOC100790782 (LOC100790782), transcript variant X1, mRNA uncharacterized LOC100790782(LOC100790782) coding protein psRNATarget