| ncRNA ID | ath-miR1886.1 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr2:15611870-15611982 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 4 - UGAGAGAAGUGAGAUGAAAUC - 24 |
| Stem-loop(if miRNA) |
GA A A ----AU GACGAUGCU GUGAG GAAGUGAGAUGAAAUCUUUGAUUGG AAUUUC GUA A ||||| ||||||||||||||||||||||||| |||||| ||| UACUC CUUCAUUCUACUUUAGAAAUUAACC UUAAAG AGU U -G C C AAAACC AUACCCCAC |
| Stem-loop sequence | GAGUGAGAGAAGUGAGAUGAAAUCUUUGAUUGGAAAUUUCAUGUAGACGAUGCUAUCACCCCAUAUGACCAAAAGAAAUUCCCAAUUAAAGAUUUCAUCUUACUUCCCUCAUG |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_001160779.1 |
|
1.0 | Arabidopsis thaliana hypothetical protein partial mRNA | hypothetical protein(AT4G18320) | coding protein | psRNATarget | |||||||||
| NM_112818.4 |
|
3.0 | Arabidopsis thaliana PLC-like phosphodiesterases superfamily protein mRNA | PLC-like phosphodiesterases superfamily protein(AT3G19310) | coding protein | psRNATarget | |||||||||
| BT002996.1 |
|
3.0 | Arabidopsis thaliana clone RAFL15-20-F05 (R20489) unknown protein (At3g19310) mRNA, partial cds | NA | coding protein | psRNATarget | |||||||||
| NM_001203689.2 |
|
3.0 | Arabidopsis thaliana Leucine-rich repeat protein kinase family protein mRNA | Leucine-rich repeat protein kinase family protein(AT5G65240) | coding protein | psRNATarget |
| 1 | PMID:18542052
"Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends"; German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ; Nat Biotechnol. 26:941-946(2008). |
| 2 | PMID:19307293
"Computational and analytical framework for small RNA profiling by high-throughput sequencing"; Fahlgren N, Sullivan CM, Kasschau KD, Chapman EJ, Cumbie JS, Montgomery TA, Gilbert SD, Dasenko M, Backman TW, Givan SA, Carrington JC; RNA. 15:992-1002(2009). |