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BaseInfo

ncRNA ID novel_gma_miR1850
Species Glycine max
Class miRNA
Genome position Chr13:40059634-40059698 [+]
Reference genome Glycine_max_v2.0
Source SRR1451650
Length 22
Mature sequence(if miRNA) 1 - CUUACGAAUCAACUUGAUCUGU - 22
Stem-loop(if miRNA) --C           C              GAU
   UUACGAAUCAA UUGAUCUGUAUGUU   A
   ||||||||||| ||||||||||||||   U
   AAUGCUUAGUU AAUUAGGCAUACAA   U
GAA           U              AUU
Stem-loop sequence CUUACGAAUCAACUUGAUCUGUAUGUUGAUAUUUUAAACAUACGGAUUAAUUUGAUUCGUAAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006593444.2
ncRNA:22   UGUCUAGUUCAACUAAGCAUUC   1
  ||=|||||||||||||||||*|
targets:3678   ACGGAUCAAGUUGAUUCGUAUG   3699

1.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
XM_003524153.3
ncRNA:22   UGUCUAGUUCAACUAAGCAUUC   1
  ||=||||||||||||*|||||*
targets:235   ACGGAUCAAGUUGAUCCGUAAA   256

2.5 PREDICTED: Glycine max uncharacterized LOC100805437 (LOC100805437), mRNA uncharacterized LOC100805437(LOC100805437) coding protein psRNATarget