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BaseInfo

ncRNA ID novel_gma_miR1848
Species Glycine max
Class miRNA
Genome position Chr13:1197406-1197515 [+]
Reference genome Glycine_max_v2.0
Source SRR1451650
Length 24
Mature sequence(if miRNA) 87 - CCUUCUCGCGGAAGAUGGUUCUUC - 110
Stem-loop(if miRNA) --               A           GA  - U  UU  C  A G       A
  AGAACCAUCUUCCGC AGAAGGAAAUG  AC G CU  GA AC C CGGAAGA G
  ||||||||||||||| |||||||||||  || | ||  || || | |||||||
  UCUUGGUAGAAGGCG UCUUCCUUUAC  UG C GA  CU UG G GCCUUCU C
CU               C           AC  U U  -U  A  G G       U
Stem-loop sequence AGAACCAUCUUCCGCAAGAAGGAAAUGGAACGUCUUUGACACACGCGGAAGAAGCUUCUUCCGGGGGUAUCUAGUCUGUCACAUUUCCUUCUCGCGGAAGAUGGUUCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534684.3
ncRNA:24   CUUCUUGGUAGAAGGCGCUCUUCC   1
  |**|=|=||||||||||||||||*
targets:297   GUCGGAUCAUCUUCCGCGAGAAGU   320

2.0 PREDICTED: Glycine max F-box protein CPR30-like (LOC100812846), transcript variant X2, mRNA F-box protein CPR30-like(LOC100812846) coding protein psRNATarget