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BaseInfo

ncRNA ID novel_gma_miR1842
Species Glycine max
Class miRNA
Genome position Chr14:3882671-3882796 [+]
Reference genome Glycine_max_v2.0
Source SRR1294482;SRR1294484
Length 21
Mature sequence(if miRNA) 106 - UUUUAAAAGUCUGGCCUGGCC - 126
Stem-loop(if miRNA) --              --        U A   U    UAC      --       --   CUGAGCC
  CCAGGUCAGGCUUU  GAAAGGCC G GCC AGCC   GAUGAA  UCUUUGA  GGC       U
  ||||||||||||||  |||||||| | ||| ||||   ||||||  |||||||  |||
  GGUCCGGUCUGAAA  UUUUCUGG C CGG UCGG   UUAUUU  AGAAACU  CCG       G
CC              AU        U -   C    -UU      UC       AU   AUAUCCG
Stem-loop sequence CCAGGUCAGGCUUUGAAAGGCCUGAGCCUAGCCUACGAUGAAUCUUUGAGGCCUGAGCCUGGCCUAUAGCCUAUCAAAGACUUUUAUUUUGGCUCGGCCUGGUCUUUUUAAAAGUCUGGCCUGGCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003550759.3
ncRNA:21   CCGGUCCGGUCUGAAAAUUUU   1
  ***|=*|||||||||||||||
targets:769   CUACGCGCCAGACUUUUAAAA   789

3.0 PREDICTED: Glycine max NEDD8 ultimate buster 1-like (LOC100778435), mRNA NEDD8 ultimate buster 1-like(LOC100778435) coding protein psRNATarget