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BaseInfo

ncRNA ID novel_gma_miR1834
Species Glycine max
Class miRNA
Genome position Chr10:36629331-36629471 [-]
Reference genome Glycine_max_v2.0
Source SRR1294482;SRR1294487;SRR1292925;SRR1295522
Length 23
Mature sequence(if miRNA) 119 - CCAAUCCGUGCCUCUUCCUCCUC - 141
Stem-loop(if miRNA) --      CG   C        C                     G     C    GU         C   
  CCAAUC  UGC UCUUCCUC UCUACCAGCUCAAUAUCUUUC UUUCA CUUU  UUUUGUAAA UACA
  ||||||  ||| |||||||| ||||||||||||||||||||| ||||| ||||  ||||||||| |||C
  GGUUAG  ACG AGAAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GAAA  AAAACAUUU AUGU
GU      AU   A        C                     G     U    AC         A   
Stem-loop sequence CCAAUCCGUGCCUCUUCCUCCUCUACCAGCUCAAUAUCUUUCGUUUCACCUUUGUUUUUGUAAACUACACUGUAAUUUACAAAACAAAAGUUGAAAGGAAAGAUAUUGAGCUGGUAGACGAGGAAGAAGCAUAGAUUGGUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014779469.1
ncRNA:23   CUCCUCCUUCUCCGUGCCUAACC   1
  ||||||||||||*||||||||||
targets:814   GAGGAGGAAGAGCCACGGAUUGG   836

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006586135.2
ncRNA:23   CUCCUCCUUCUCCGUGCCUAACC   1
  ||||||||||||*||||||||||
targets:814   GAGGAGGAAGAGCCACGGAUUGG   836

1.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_006591670.1
ncRNA:23   CUCCUCCUUCUCCGUGCCUAACC   1
  ||||||||||||*||||||||||
targets:70   GAGGAGGAAGAGCCACGGAUUGG   92

1.5 PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828) coding protein psRNATarget