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BaseInfo

ncRNA ID gar-miR2947
Species Gossypium arboreum
Class miRNA
Genome position NA
Reference genome NA
Source miRBase
Length 22
Mature sequence(if miRNA) NA - UAUACCGUGCCCAUGACUGUAG - NA
Stem-loop(if miRNA)     U  UA  C  A     -                  A        UU   UGAUU
AGCU GU  AG GA GUUAC GUUAUGGGCAUGGUAUGG UUGCUGUU  UGA     U
|||| ||  || || ||||| |||||||||||||||||| ||||||||  |||     G
UCGA CG  UC CU CGAUG CAGUACCCGUGCCAUAUU AACGACAA  ACU     U
    -  GC  A  A     U                  A        UU   UUCGU
Stem-loop sequence AGCUUGUUAAGCGAAGUUACGUUAUGGGCAUGGUAUGGAUUGCUGUUUUUGAUGAUUUGUUGCUUUCAUUAACAGCAAAUUAUACCGUGCCCAUGACUGUAGCAUCACUCGGCAGCU

Reference

1 PMID:19889219
"Genome-wide analysis reveals rapid and dynamic changes in miRNA and siRNA sequence and expression during ovule and fiber development in allotetraploid cotton (Gossypium hirsutum L.)";
Pang M, Woodward AW, Agarwal V, Guan X, Ha M, Ramachandran V, Chen X, Triplett BA, Stelly DM, Chen ZJ;
Genome Biol. 10:R122(2009).