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BaseInfo

ncRNA ID novel_gma_miR1777
Species Glycine max
Class miRNA
Genome position Chr7:35071810-35071868 [+]
Reference genome Glycine_max_v2.0
Source SRR1451649;DRR031984
Length 21
Mature sequence(if miRNA) 1 - AAAAACUCUCAAACCUGAUCC - 21
Stem-loop(if miRNA) --                      CUG UU
  AAAAACUCUCAAACCUGAUCCA   C  U
  ||||||||||||||||||||||   |
  UUUUUGAGAGUUUGGACUAGGU   G  C
UC                      -UA UA
Stem-loop sequence AAAAACUCUCAAACCUGAUCCACUGCUUUCAUGAUUGGAUCAGGUUUGAGAGUUUUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003525492.3
ncRNA:21   CCUAGUCCAAACUCUCAAAAA   1
  *****||||||||||||||||
targets:630   AACAAAGGUUUGAGAGUUUUU   650

3.0 PREDICTED: Glycine max dehydration-responsive element-binding protein 1F-like (LOC100795696), mRNA dehydration-responsive element-binding protein 1F-like(LOC100795696) coding protein psRNATarget
XM_014762568.1
ncRNA:21   CCUAGUCCAAACUCUCAAAAA   1
  |*||=*||||||||||||||*
targets:71   GUAUUUGGUUUGAGAGUUUUG   91

3.0 PREDICTED: Glycine max lipid phosphate phosphatase 2-like (LOC100805924), transcript variant X2, mRNA lipid phosphate phosphatase 2-like(LOC100805924) coding protein psRNATarget
XM_003543290.3
ncRNA:21   CCUAGUCCAAACUCUCAAAAA   1
  *||**|||||||||||||||*
targets:865   AGAAGAGGUUUGAGAGUUUUG   885

3.0 PREDICTED: Glycine max protein STABILIZED1-like (LOC100783360), mRNA protein STABILIZED1-like(LOC100783360) coding protein psRNATarget
XM_003540308.3
ncRNA:21   CCUAGUCCAAACUCUCAAAAA   1
  *||**|||||||||||||||*
targets:959   AGAAGAGGUUUGAGAGUUUUG   979

3.0 PREDICTED: Glycine max protein STABILIZED1-like (LOC100779042), mRNA protein STABILIZED1-like(LOC100779042) coding protein psRNATarget