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BaseInfo

ncRNA ID novel_gma_miR1772
Species Glycine max
Class miRNA
Genome position Chr1:18318107-18318244 [+]
Reference genome Glycine_max_v2.0
Source SRR1451649
Length 24
Mature sequence(if miRNA) 115 - AACCGAUGUUAACAUGUGAUACGU - 138
Stem-loop(if miRNA) --    G                                       CA  CA                U
  GUAU AUAUGUUAACAUCGGUUUUUCAAAAAACCGAUGUUAAUG  UA  CGUUAACAUCGGUUUU U
  |||| |||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||
  CAUA UGUACAAUUGUAGCCAAAAAGUUUUUUGGCUACAAUUGC  AU  GUAAUUGUAGCCAAAA G
UG    G                                       AC  AC                G
Stem-loop sequence GUAUGAUAUGUUAACAUCGGUUUUUCAAAAAACCGAUGUUAAUGCAUACACGUUAACAUCGGUUUUUUGGAAAACCGAUGUUAAUGCAUACACGUUAACAUCGGUUUUUUGAAAAACCGAUGUUAACAUGUGAUACGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003534746.3
ncRNA:24   UGCAUAGUGUACAAUUGUAGCCAA   1
  *=|*||*||||*||||||||||||
targets:2456   CUGGAUAACAUCUUAACAUCGGUU   2479

2.5 PREDICTED: Glycine max twinkle homolog protein, chloroplastic/mitochondrial (LOC100804637), mRNA twinkle homolog protein, chloroplastic/mitochondrial(LOC100804637) coding protein psRNATarget