ncRNA ID | novel_gma_miR1772 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr1:18318107-18318244 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451649 |
Length | 24 |
Mature sequence(if miRNA) | 115 - AACCGAUGUUAACAUGUGAUACGU - 138 |
Stem-loop(if miRNA) |
--    G                                       CA  CA                U   GUAU AUAUGUUAACAUCGGUUUUUCAAAAAACCGAUGUUAAUG  UA  CGUUAACAUCGGUUUU U   |||| |||||||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||   CAUA UGUACAAUUGUAGCCAAAAAGUUUUUUGGCUACAAUUGC  AU  GUAAUUGUAGCCAAAA G UG    G                                       AC  AC                G |
Stem-loop sequence | GUAUGAUAUGUUAACAUCGGUUUUUCAAAAAACCGAUGUUAAUGCAUACACGUUAACAUCGGUUUUUUGGAAAACCGAUGUUAAUGCAUACACGUUAACAUCGGUUUUUUGAAAAACCGAUGUUAACAUGUGAUACGU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003534746.3 |
|
2.5 | PREDICTED: Glycine max twinkle homolog protein, chloroplastic/mitochondrial (LOC100804637), mRNA | twinkle homolog protein, chloroplastic/mitochondrial(LOC100804637) | coding protein | psRNATarget |