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BaseInfo

ncRNA ID	novel_gma_miR1770
Species	Glycine max
Class	miRNA
Genome position	Chr5:8042412-8042623 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451649
Length	21
Mature sequence(if miRNA)	192 - CUUUCUUUCCAAUUUUCAAAU - 212
Stem-loop(if miRNA)	--    C                         G                C                  --------------    C       UC           AUAUCA   CUUU UUUCCAAUUUUCAAAUGUUUGUAUA GAAACACUGAAUCAAA UUUUUUAUUGAUUUUUGU              UCUC CUUUUUU  GCAUAAACUUU      U   |||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||              |||| |||||||  |||||||||||   GAAA AAAGGUUAAAAGUUUACAAACAUAU CUUUGUGACUUAGUUU AAAAAAUAACUAAAAACA              AGAG GAAAAAA  CGUAUUUGAAA      G AU    C                         G                U                  AAAUUAAAAAAACA    U       GA           ACUUUA
Stem-loop sequence	CUUUCUUUCCAAUUUUCAAAUGUUUGUAUAGGAAACACUGAAUCAAACUUUUUUAUUGAUUUUUGUUCUCCCUUUUUUUCGCAUAAACUUUAUAUCAUGAUUUCAAAAGUUUAUGCAGAAAAAAGUGAGAACAAAAAAAUUAAAACAAAAAUCAAUAAAAAAUUUUGAUUCAGUGUUUCGUAUACAAACAUUUGAAAAUUGGAAACAAAGUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HM162860.1	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   *||||||||*||||||||||| targets:1749   UUUUGAAAAGUGGAAAGAAAG   1769 Target Full Sequence	1.5	Glycine max sieve element occlusion by forisomes 3 (SEO-F3) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001254693.1	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   *||||||||*||||||||||| targets:1749   UUUUGAAAAGUGGAAAGAAAG   1769 Target Full Sequence	1.5	Glycine max sieve element occlusion by forisomes 3 (SEO-F3), mRNA	sieve element occlusion by forisomes 3(SEO-F3)	coding protein	psRNATarget
XM_003542908.3	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   =||*||||||*|||||||||| targets:751   GUUAGAAAAUGGGAAAGAAAG   771 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100800652 (LOC100800652), transcript variant X2, mRNA	uncharacterized LOC100800652(LOC100800652)	coding protein	psRNATarget
BT096028.1	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   =||*||||||*|||||||||| targets:753   GUUAGAAAAUGGGAAAGAAAG   773 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-25O12 unknown mRNA	NA	coding protein	psRNATarget
XM_003542907.3	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   =||*||||||*|||||||||| targets:1019   GUUAGAAAAUGGGAAAGAAAG   1039 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100800652 (LOC100800652), transcript variant X1, mRNA	uncharacterized LOC100800652(LOC100800652)	coding protein	psRNATarget
AK243732.1	ncRNA:21   UAAACUUUUAACCUUUCUUUC   1   =||*||||||*|||||||||| targets:1745   GUUAGAAAAUGGGAAAGAAAG   1765 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-01-B16	NA	coding protein	psRNATarget