Search result

BaseInfo

ncRNA ID novel_gma_miR1755
Species Glycine max
Class miRNA
Genome position Chr2:12772679-12772756 [-]
Reference genome Glycine_max_v2.0
Source SRR1451649
Length 21
Mature sequence(if miRNA) 58 - AAUGAAUAAUGUGAGAAGCCU - 78
Stem-loop(if miRNA) AAU     ---AU     A   CU     -A     AAAAGC
   GAAUA     GUGAG AGC  AACUC  AUCCC      U
   |||||     ||||| |||  |||||  |||||
   CUUAU     UACUC UCG  UUGGG  UAGGG      A
--U     AUAUU     C   --     AG     AACUUG
Stem-loop sequence AAUGAAUAAUGUGAGAAGCCUAACUCAAUCCCAAAAGCUAGUUCAAGGGAUGAGGGUUGCUCCUCAUUUAUAUAUUCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287234.1
ncRNA:21   UCCGAAGAGUGUAAUAAGUAA   1
  **||||=||||||||||*|||
targets:1483   UUGCUUUUCACAUUAUUGAUU   1503

2.5 Glycine max cDNA, clone: GMFL01-47-E19 NA coding protein psRNATarget
XM_006585699.2
ncRNA:21   UCCGAAGAGUGUAAUAAGUAA   1
  **||||=||||||||||*|||
targets:1558   UUGCUUUUCACAUUAUUGAUU   1578

2.5 PREDICTED: Glycine max cyclic nucleotide-gated ion channel 2-like (LOC100810471), transcript variant X2, mRNA cyclic nucleotide-gated ion channel 2-like(LOC100810471) coding protein psRNATarget
XM_003531792.3
ncRNA:21   UCCGAAGAGUGUAAUAAGUAA   1
  **||||=||||||||||*|||
targets:1626   UUGCUUUUCACAUUAUUGAUU   1646

2.5 PREDICTED: Glycine max cyclic nucleotide-gated ion channel 2-like (LOC100810471), transcript variant X1, mRNA cyclic nucleotide-gated ion channel 2-like(LOC100810471) coding protein psRNATarget
XM_003552501.3
ncRNA:21   UCCGAAGAGUGUAAUAAGUAA   1
  **||||=||||||||||*|||
targets:1666   UUGCUUUUCACAUUAUUGAUU   1686

2.5 PREDICTED: Glycine max cyclic nucleotide-gated ion channel 2 (LOC100798823), mRNA cyclic nucleotide-gated ion channel 2(LOC100798823) coding protein psRNATarget