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BaseInfo

ncRNA ID	egu-miR172a
Species	Elaeis guineensis
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - AGAAUCUUGAUGAUGCUGCAU - NA
Stem-loop(if miRNA)	U                    A     GUUAA  A   CCAAA    GUUUA   A   AU  UGAGCCUUCAACAUCUGCGUUGUCUCAGGAGGUGAAU  GUGCAGCAUCAUCAAGAUUC CAUCU     UC CUG     UUCU     GUU UUG  CC                                     G  |||||||||||||||||||| |||||     || |||     ||||     ||| |||  ||                                     A  UACGUCGUAGUAGUUCUAAG GUAGG     AG GAC     AAGA     CCG UAU  AG                                     A -                    A     -AAAC  G   AUCUG    ---AA   -   --  AGGGUCUGGCAUGCGGAACAACAGCGUGGACGUAAGG
Stem-loop sequence	UGUGCAGCAUCAUCAAGAUUCACAUCUGUUAAUCACUGCCAAAUUCUGUUUAGUUAUUGAUCCUGAGCCUUCAACAUCUGCGUUGUCUCAGGAGGUGAAUGAAGGAAUGCAGGUGCGACAACAAGGCGUACGGUCUGGGAGAUAUGCCAAAGAAGUCUACAGGGACAAAGGAUGAGAAUCUUGAUGAUGCUGCAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
GBSV01034936.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:545   CUGCAGCAUCAUCAGGAUUCU   565 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene16769_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010931581.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1349   CUGCAGCAUCAUCAGGAUUCU   1369 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019852625.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1891   CUGCAGCAUCAUCAGGAUUCU   1911 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010909212.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1731   CUGCAGCAUCAUCAGGAUUCU   1751 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis AP2-like ethylene-responsive transcription factor TOE3 (LOC105034164), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010931580.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1987   CUGCAGCAUCAUCAGGAUUCU   2007 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105051240), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010909211.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1776   CUGCAGCAUCAUCAGGAUUCU   1796 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis AP2-like ethylene-responsive transcription factor TOE3 (LOC105034164), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010922647.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1879   CUGCAGCAUCAUCAGGAUUCU   1899 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis ethylene-responsive transcription factor RAP2-7 (LOC105044670), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924194.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1997   CUGCAGCAUCAUCAGGAUUCU   2017 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105045791), mRNA	NA	coding protein	psRNATarget
XM_010922646.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1925   CUGCAGCAUCAUCAGGAUUCU   1945 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis ethylene-responsive transcription factor RAP2-7 (LOC105044670), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_010933735.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2204   CUGCAGCAUCAUCAGGAUUCU   2224 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_010933734.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2209   CUGCAGCAUCAUCAGGAUUCU   2229 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_010933733.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2222   CUGCAGCAUCAUCAGGAUUCU   2242 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010933732.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:2228   CUGCAGCAUCAUCAGGAUUCU   2248 Target Full Sequence	1.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105052807), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01036225.1	ncRNA:19   CGUCGUAGUAGUUCUAAGA   1   ||||||||||||=|||||| targets:1   GCAGCAUCAUCAGGAUUCU   19 Target Full Sequence	1.5	TSA: Elaeis guineensis Unigene18060_All transcribed RNA sequence	NA	coding protein	psRNATarget
XM_010924516.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |***||||||||||||||||| targets:315   AAAAAGCAUCAUCAAGAUUCU   335 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis unknown protein 1-like (LOC105046032), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010924515.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   |***||||||||||||||||| targets:325   AAAAAGCAUCAUCAAGAUUCU   345 Target Full Sequence	2.0	PREDICTED: Elaeis guineensis unknown protein 1-like (LOC105046032), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JO087572.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1425   AUGCAGCAUCAUCAGGAUUCC   1445 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00324.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087571.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1426   AUGCAGCAUCAUCAGGAUUCC   1446 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00323.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087565.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1447   AUGCAGCAUCAUCAGGAUUCC   1467 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00317.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087568.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1448   AUGCAGCAUCAUCAGGAUUCC   1468 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00320.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_010930045.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1548   AUGCAGCAUCAUCAGGAUUCC   1568 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2 (LOC105050146), mRNA	NA	coding protein	psRNATarget
JO087570.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1425   AUGCAGCAUCAUCAGGAUUCC   1445 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00322.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087567.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1426   AUGCAGCAUCAUCAGGAUUCC   1446 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00319.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087566.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1447   AUGCAGCAUCAUCAGGAUUCC   1467 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00318.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087569.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||* targets:1448   AUGCAGCAUCAUCAGGAUUCC   1468 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00321.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087578.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:389   GUGCAGCAUCAUCAGGAUUCC   409 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00330.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
JO087577.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:389   GUGCAGCAUCAUCAGGAUUCC   409 Target Full Sequence	2.5	TSA: Elaeis guineensis isotig00329.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019846664.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:1382   GUGCAGCAUCAUCAGGAUUCC   1402 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105033440), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_019846663.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:1616   GUGCAGCAUCAUCAGGAUUCC   1636 Target Full Sequence	2.5	PREDICTED: Elaeis guineensis floral homeotic protein APETALA 2-like (LOC105033440), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_019854797.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||==|||||||||||||||* targets:376   CUGUGGCAUCAUCAAGAUUCA   396 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis uncharacterized LOC109506608 (LOC109506608), transcript variant X1, mRNA	NA	coding protein	psRNATarget
GBSV01015198.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   =*|==|||||||||||||||* targets:14   GCGUGGCAUCAUCAAGAUUCA   34 Target Full Sequence	3.0	TSA: Elaeis guineensis CL5623.Contig1_All transcribed RNA sequence	NA	coding protein	psRNATarget
JO099524.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   ***=|||=||||||||||||| targets:1219   CAAUAGCGUCAUCAAGAUUCU   1239 Target Full Sequence	3.0	TSA: Elaeis guineensis isotig12297.Elguifruit mRNA sequence	NA	coding protein	psRNATarget
XM_019847730.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_019847729.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_019847728.1	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1377   CUGUAUCUUCAUCAAGAUUCU   1397 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_010912726.2	ncRNA:21   UACGUCGUAGUAGUUCUAAGA   1   *||=|*|*||||||||||||| targets:1383   CUGUAUCUUCAUCAAGAUUCU   1403 Target Full Sequence	3.0	PREDICTED: Elaeis guineensis cysteine-rich receptor-like protein kinase 10 (LOC105037021), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1

PMID:21392545 "Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering"; Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Honer Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Puhler A, Borth N, Grillari J; J Biotechnol. 153:62-75(2011).