Search result

BaseInfo

ncRNA ID	bra-miR5654b
Species	Brassica rapa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - AUAAAUCCCAAGCAUCAUCCA - NA
Stem-loop(if miRNA)	UAA   -UG     -   CU   CGUUUCU  UUC  -U          --UC   UAUUA                          CC    U    C  GA    UGA   UAUUG UAG  CUG       UG   GU  CACUCUUUUG    AGG     ACAAGAUAAAUCCCAAGCAUCAUCCA  UUAU AGCC UU  A    |||   ||||| |||  |||       ||   ||  ||||||||||    |||     ||||||||||||||||||||||||||  |||| |||| ||    ACU   GUAAC AUC  GAU       AC   CG  GUGAGAAAAU    UCC     UGUUUUAUUUAGGGUUCGUAGUAGGU  AAUG UCGG AG  C -AG   UUA     C   AG   -------  CUC  UU          CUUC   UCUCA                          AA    U    A  UA
Stem-loop sequence	UAAUGAUGUAUUGUAGCUCUGCGUUUCUUGUUCGUUCACUCUUUUGUCAGGUAUUAACAAGAUAAAUCCCAAGCAUCAUCCACCUUAUUAGCCCUUGAACAUGAAGGCUUGUAAAAUGGAUGAUGCUUGGGAUUUAUUUUGUACUCUCCUCUUCUAAAAGAGUGUUGCCUCCAUAGGACUACCAAUGAUUUCAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009112378.2	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*||||||||||||||*|||| targets:1631   UCGAUGAUGCUUGGGAGUUAU   1651 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC103836144), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC103836144)	coding protein	psRNATarget
XM_009119806.2	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*|||||||||||||||*||| targets:1767   UCGAUGAUGCUUGGGAUCUAU   1787 Target Full Sequence	1.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like (LOC103843103), mRNA	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like(LOC103843103)	coding protein	psRNATarget
XM_018655415.1	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   **||*||||||||||||||=| targets:784   CAGAAGAUGCUUGGGAUUUGU   804 Target Full Sequence	2.5	PREDICTED: Brassica rapa probable disease resistance protein At1g12280 (LOC103843924), mRNA	NA	coding protein	psRNATarget
XM_018654457.1	ncRNA:21   ACCUACUACGAACCCUAAAUA   1   |*|||||*|||||||||*||| targets:3585   UCGAUGAAGCUUGGGAUCUAU   3605 Target Full Sequence	2.5	PREDICTED: Brassica rapa pentatricopeptide repeat-containing protein At1g12300, mitochondrial (LOC103843107), mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012).