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BaseInfo

ncRNA ID	bra-miR1885b
Species	Brassica rapa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	22
Mature sequence(if miRNA)	NA - UACAUCUUCUCCGCGGAAGCUC - NA
Stem-loop(if miRNA)	-     U     C  UA  C   C   C    C        U -U            C    U      A       C   -UAAAAAA          A          -          AAU  A          AGAAUGAUACUG     -  ACAUUCGAUUAGAUGCGAUAAUCUUAUC  UUGUC CACAA UG  UC AUC UGU UUCA GAGCUUCC C  AGAAGAUGUGCG AGAG CUUUCU AGUCACA UCA        UUCAAAGAAA GGAAUCAUAC UUUCAUUGAU   GA AUCAAUAGAG            AGCUC UU                            C  ||||| ||||| ||  || ||| ||| |||| |||||||| |  |||||||||||| |||| |||||| ||||||| |||        |||||||||| |||||||||| ||||||||||   || ||||||||||            ||||| ||                            U  AACAG GUGUU AC  AG UGG ACA AAGU CUCGAAGG G  UCUUCUACAUGC UCUC GAAAGA UCAGUGU AGU        AAGUUUCUUU CCUUAGUAUG AAAGUAACUA   CU UAGUUAUCUC            CUACU GG                            C A     -     A  CA  A   A   A    A        C CC            A    C      A       A   UUUCACUA          C          G          CUU  C          ------------     A  UAACCAGUAGUCGAGAAUGUUCGUUAAU
Stem-loop sequence	UUGUCUCACAACUGUAUCCAUCCUGUCUUCACGAGCUUCCUCUAGAAGAUGUGCGCAGAGUCUUUCUAAGUCACACUCAUAAAAAAUUCAAAGAAAAGGAAUCAUACUUUCAUUGAUAAUGAAAUCAAUAGAGAGAAUGAUACUGAGCUCUUACAUUCGAUUAGAUGCGAUAAUCUUAUCCUCUAAUUGCUUGUAAGAGCUGAUGACCAAUGGAUCAUCCUCUAUUGAUCUCUUCAUCAAUGAAAGGUAUGAUUCCCUUUCUUUGAAAUCACUUUUGAAUGUGACUAAGAAAGCCUCUACGUACAUCUUCUCCGCGGAAGCUCAUGAAAACAAGGUAGAACCAAUUGUGGACAAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_018652518.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   |||||||||||||||||||||| targets:1635   GAGCUUCCGCGGAGAAGAUGUA   1656 Target Full Sequence	0.0	PREDICTED: Brassica rapa putative UDP-arabinose 4-epimerase 4 (LOC103827897), mRNA	NA	coding protein	psRNATarget
XM_009133014.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||| targets:389   UAGCUUCCGCGGGGAAGAUGUA   410 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X6, mRNA	probable disease resistance protein RPP1(LOC103855958)	coding protein	psRNATarget
XM_009133013.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||| targets:392   UAGCUUCCGCGGGGAAGAUGUA   413 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X5, mRNA	probable disease resistance protein RPP1(LOC103855958)	coding protein	psRNATarget
XM_018657183.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||| targets:393   UAGCUUCCGCGGGGAAGAUGUA   414 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_018657182.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||| targets:390   UAGCUUCCGCGGGGAAGAUGUA   411 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009133012.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||| targets:391   UAGCUUCCGCGGGGAAGAUGUA   412 Target Full Sequence	1.5	PREDICTED: Brassica rapa probable disease resistance protein RPP1 (LOC103855958), transcript variant X1, mRNA	probable disease resistance protein RPP1(LOC103855958)	coding protein	psRNATarget
XM_009125007.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   |||||||*|||||||||||||* targets:282   GAGCUUCAGCGGAGAAGAUGUC   303 Target Full Sequence	2.0	PREDICTED: Brassica rapa disease resistance protein RPS6 (LOC103848010), mRNA	disease resistance protein RPS6(LOC103848010)	coding protein	psRNATarget
XM_009127973.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *||||||=||||=||||||||| targets:215   UAGCUUCUGCGGGGAAGAUGUA   236 Target Full Sequence	2.5	PREDICTED: Brassica rapa putative disease resistance protein At4g11170 (LOC103851141), transcript variant X2, mRNA	putative disease resistance protein At4g11170(LOC103851141)	coding protein	psRNATarget
XM_009127972.2	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *||||||=||||=||||||||| targets:212   UAGCUUCUGCGGGGAAGAUGUA   233 Target Full Sequence	2.5	PREDICTED: Brassica rapa putative disease resistance protein At4g11170 (LOC103851141), transcript variant X1, mRNA	putative disease resistance protein At4g11170(LOC103851141)	coding protein	psRNATarget
XM_018657646.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:489   CAGCUUCCGCGGGGAAGAUGUC   510 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103856441), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018653631.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:434   AAGCUUCCGCGGGGAAGAUGUC   455 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103834349), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018653632.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:434   AAGCUUCCGCGGGGAAGAUGUC   455 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103834349), transcript variant X4, mRNA	NA	coding protein	psRNATarget
AB605024.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:222   AAGCUUCCGCGGGGAAGAUGUC   243 Target Full Sequence	2.5	Brassica rapa Crr1 mRNA for clubroot disease resistance protein, complete cds	NA	coding protein	psRNATarget
XM_009133545.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:453   CAGCUUCCGCGGGGAAGAUGUC   474 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103856441), transcript variant X2, mRNA	disease resistance protein TAO1-like(LOC103856441)	coding protein	psRNATarget
XM_009133544.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:489   CAGCUUCCGCGGGGAAGAUGUC   510 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103856441), transcript variant X1, mRNA	disease resistance protein TAO1-like(LOC103856441)	coding protein	psRNATarget
XM_018653630.1	ncRNA:22   CUCGAAGGCGCCUCUUCUACAU   1   *|||||||||||=||||||||* targets:441   AAGCUUCCGCGGGGAAGAUGUC   462 Target Full Sequence	2.5	PREDICTED: Brassica rapa disease resistance protein TAO1-like (LOC103834349), transcript variant X1, mRNA	NA	coding protein	psRNATarget

Reference

1	PMID:22025521 "Identification of conserved and novel microRNAs that are responsive to heat stress in Brassica rapa"; Yu X, Wang H, Lu Y, de Ruiter M, Cariaso M, Prins M, van Tunen A, He Y; J Exp Bot. 63:1025-1038(2012).