ncRNA ID | novel_gma_miR1709 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr7:18765516-18765696 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451648 |
Length | 24 |
Mature sequence(if miRNA) | 1 - UCGAGACUGUUGUAGAAUGCAACG - 24 |
Stem-loop(if miRNA) |
--     -    U     A     AC                                         -   U          A     A GU   UCGAG ACUG UGUAG AUGCA  GCAUUCUAAGACAGUCACGUGUCAAUGAUCGUCUUAGAAUG CAU GCAUUCUACG CGGUC C  G   ||||| |||| ||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |  U   AGUUC UGGC GCAUC UACGU  CGUAAGAUUCUGUCAGUGCACAGUUGCUGGCAGAAUCUUAC GUA CGUAAGAUGC GCCAG G  C AC     C    U     A     AU                                         U   -          A     - AA |
Stem-loop sequence | UCGAGACUGUUGUAGAAUGCAACGCAUUCUAAGACAGUCACGUGUCAAUGAUCGUCUUAGAAUGCAUUGCAUUCUACGACGGUCACGUGUCAAGGACCGACGUAGAAUGCAUGUCAUUCUAAGACGGUCGUUGACACGUGACUGUCUUAGAAUGCUAUGCAUACUACGUCGGUCCUUGACA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003540238.3 |
|
2.5 | PREDICTED: Glycine max uncharacterized membrane protein YuiD-like (LOC100786344), transcript variant X1, mRNA | uncharacterized membrane protein YuiD-like(LOC100786344) | coding protein | psRNATarget | |||||||||
XM_014765020.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized membrane protein YuiD-like (LOC100786344), transcript variant X2, mRNA | uncharacterized membrane protein YuiD-like(LOC100786344) | coding protein | psRNATarget |