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BaseInfo

ncRNA ID novel_gma_miR1709
Species Glycine max
Class miRNA
Genome position Chr7:18765516-18765696 [+]
Reference genome Glycine_max_v2.0
Source SRR1451648
Length 24
Mature sequence(if miRNA) 1 - UCGAGACUGUUGUAGAAUGCAACG - 24
Stem-loop(if miRNA) --     -    U     A     AC                                         -   U          A     A GU
  UCGAG ACUG UGUAG AUGCA  GCAUUCUAAGACAGUCACGUGUCAAUGAUCGUCUUAGAAUG CAU GCAUUCUACG CGGUC C  G
  ||||| |||| ||||| |||||  ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||| |  U
  AGUUC UGGC GCAUC UACGU  CGUAAGAUUCUGUCAGUGCACAGUUGCUGGCAGAAUCUUAC GUA CGUAAGAUGC GCCAG G  C
AC     C    U     A     AU                                         U   -          A     - AA
Stem-loop sequence UCGAGACUGUUGUAGAAUGCAACGCAUUCUAAGACAGUCACGUGUCAAUGAUCGUCUUAGAAUGCAUUGCAUUCUACGACGGUCACGUGUCAAGGACCGACGUAGAAUGCAUGUCAUUCUAAGACGGUCGUUGACACGUGACUGUCUUAGAAUGCUAUGCAUACUACGUCGGUCCUUGACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003540238.3
ncRNA:24   GCAACGUAAGAUGUUGUCAGAGCU   1
  |||**||||||=|||||||||||=
targets:317   CGUCACAUUCUGCAACAGUCUCGG   340

2.5 PREDICTED: Glycine max uncharacterized membrane protein YuiD-like (LOC100786344), transcript variant X1, mRNA uncharacterized membrane protein YuiD-like(LOC100786344) coding protein psRNATarget
XM_014765020.1
ncRNA:24   GCAACGUAAGAUGUUGUCAGAGCU   1
  |||**||||||=|||||||||||=
targets:317   CGUCACAUUCUGCAACAGUCUCGG   340

2.5 PREDICTED: Glycine max uncharacterized membrane protein YuiD-like (LOC100786344), transcript variant X2, mRNA uncharacterized membrane protein YuiD-like(LOC100786344) coding protein psRNATarget