| ncRNA ID | bra-miR172b-5p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | NA |
| Reference genome | NA |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | NA - GCAGCACCAUUAAGAUUCACA - NA |
| Stem-loop(if miRNA) |
U A C A -GAAAU G AA UA GU GGUGCAGCA CAUUAAGAUUC CAUG U AGA ACCCUAAUU U || ||||||||| ||||||||||| |||| | ||| ||||||||| CA CUACGUCGU GUAGUUCUAAG GUAU A UCU UGGGAUUAA A A A A A AUGUAU G -- UU |
| Stem-loop sequence | UGUAGGUGCAGCACCAUUAAGAUUCACAUGGAAAUUGAGAAAACCCUAAUUUAUAUUAAUUAGGGUUCUGAUAUGUAUAUGAGAAUCUUGAUGAUGCUGCAUCAACA |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009147404.2 |
|
2.0 | PREDICTED: Brassica rapa PHD finger protein At3g20280 (LOC103869339), mRNA | PHD finger protein At3g20280(LOC103869339) | coding protein | psRNATarget |
| 1 | PMID:18558089
"Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008). |