Search result

BaseInfo

ncRNA ID	novel_gma_miR1678
Species	Glycine max
Class	miRNA
Genome position	Chr2:7899403-7899566 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451648
Length	21
Mature sequence(if miRNA)	144 - AAAAACCGAUGUUAACUGCCA - 164
Stem-loop(if miRNA)	--                  C                            C      -   A UU C   U     C    AUU   AAAAACCGAUGUUAACUG CACUAACAACAUCGGUUAUUUAAAAAAC GAUGUU GUU G  C AGU AACAU GGUU   U   |||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||| |  | ||| ||||| ||||   UUUUUGGCUACAAUUGAC GUGAUUGUUGUAGCUAAUAAAUUUUUUG CUACAA CGA C  G UCG UUGUA CUAA   A AU                  C                            A      U   C UU A   -     A    AAA
Stem-loop sequence	AAAAACCGAUGUUAACUGCCACUAACAACAUCGGUUAUUUAAAAAACCGAUGUUGUUAGUUCCAGUUAACAUCGGUUAUUUAAAAAAUCAAUGUUGCUAGUUCCAGCUAACAUCAGUUUUUUAAAUAAUCGAUGUUGUUAGUGCCAGUUAACAUCGGUUUUUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB171004.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:14   UGACAUUUAACAUCGGUUUUU   34 Target Full Sequence	2.0	Sequence 8668 from Patent EP2559767	NA	coding protein	psRNATarget
JB171004.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:55   UGACAUUUAACAUCGGUUUUU   75 Target Full Sequence	2.0	Sequence 8668 from Patent EP2559767	NA	coding protein	psRNATarget
JB171004.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:156   UGACAUUUAACAUCGGUUUUU   176 Target Full Sequence	2.0	Sequence 8668 from Patent EP2559767	NA	coding protein	psRNATarget
JB171004.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   |**||*||||||||||||||| targets:115   UAACAUUUAACAUCGGUUUUU   135 Target Full Sequence	2.0	Sequence 8668 from Patent EP2559767	NA	coding protein	psRNATarget
HI410543.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:14   UGACAUUUAACAUCGGUUUUU   34 Target Full Sequence	2.0	Sequence 8668 from Patent EP2074227	NA	coding protein	psRNATarget
HI410543.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:55   UGACAUUUAACAUCGGUUUUU   75 Target Full Sequence	2.0	Sequence 8668 from Patent EP2074227	NA	coding protein	psRNATarget
HI410543.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:156   UGACAUUUAACAUCGGUUUUU   176 Target Full Sequence	2.0	Sequence 8668 from Patent EP2074227	NA	coding protein	psRNATarget
HI410543.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   |**||*||||||||||||||| targets:115   UAACAUUUAACAUCGGUUUUU   135 Target Full Sequence	2.0	Sequence 8668 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242673.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:14   UGACAUUUAACAUCGGUUUUU   34 Target Full Sequence	2.0	Sequence 8668 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242673.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:55   UGACAUUUAACAUCGGUUUUU   75 Target Full Sequence	2.0	Sequence 8668 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242673.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   ||*||*||||||||||||||| targets:156   UGACAUUUAACAUCGGUUUUU   176 Target Full Sequence	2.0	Sequence 8668 from Patent EP2985353	NA	coding protein	psRNATarget
LQ242673.1	ncRNA:21   ACCGUCAAUUGUAGCCAAAAA   1   |**||*||||||||||||||| targets:115   UAACAUUUAACAUCGGUUUUU   135 Target Full Sequence	2.0	Sequence 8668 from Patent EP2985353	NA	coding protein	psRNATarget