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BaseInfo

ncRNA ID novel_gma_miR1669
Species Glycine max
Class miRNA
Genome position Chr9:27417896-27417980 [-]
Reference genome Glycine_max_v2.0
Source SRR1294480
Length 22
Mature sequence(if miRNA) 1 - CAAUUGGGCUUGGAUCUGGAAU - 22
Stem-loop(if miRNA) -   AUC   UG      C   --AC       G GUUUUUAA
 UUU   AUU  GGCCUA UUG    UAAUUUU U        U
 |||   |||  |||||| |||    ||||||| |
 AAG   UAG  UCGGGU AAC    AUUAAGA G        U
U   GUC   GU      U   GAAU       G ACUUUAAU
Stem-loop sequence UUUAUCAUUUGGGCCUACUUGACUAAUUUUGUGUUUUUAAUUUAAUUUCAGGAGAAUUAUAAGCAAUUGGGCUUGGAUCUGGAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520580.3
ncRNA:22   UAAGGUCU-AGGUUCGGGUUAAC   1
  =**=||||-||||||||||||||
targets:2078   GCCUCAGACUCCAAGCCCAAUUG   2100

3.0 PREDICTED: Glycine max cation/H(+) antiporter 20 (LOC100798644), mRNA cation/H(+) antiporter 20(LOC100798644) coding protein psRNATarget