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BaseInfo

ncRNA ID	bra-miR157a
Species	Brassica rapa
Class	miRNA
Genome position	NA
Reference genome	NA
Source	miRBase
Length	21
Mature sequence(if miRNA)	NA - UUGACAGAAGAUAGAGAGCAC - NA
Stem-loop(if miRNA)	C    UGUU        -           U     --U        A  ACA   GUA    -     A   C GUGAUG UGGU    GACAGAAG AUAGAGAGCAC AAGGA   GACAUGCA GU   UAU   UGUA UCAUC CAC G |||||| ||||    |||||||| ||||||||||| |||||   |||||||| ||   |||   |||| ||||| ||| C UAUUAC ACCA    CUGUCUUC UAUCUCUCGUG UUUCU   CUGUACGU CG   AUA   ACAU AGUAG GUG C       C    ----        A           C     CAU        C  ---   AAA    U     -   U
Stem-loop sequence	GUGAUGCUGGUUGUUGACAGAAGAUAGAGAGCACUAAGGAUGACAUGCAAGUACAUAUGUAUGUAUCAUCACACCGCCUGUGGAUGAUUACAAAAAUAGCCUGCAUGUCUACUCUUUCGUGCUCUCUAUACUUCUGUCACCACCAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009104735.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1932   GUGCUCUCUCUCUUCUGUCAA   1952 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X1, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009104737.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1926   GUGCUCUCUCUCUUCUGUCAA   1946 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_018653833.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1770   GUGCUCUCUCUCUUCUGUCAA   1790 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_018653131.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1739   GUGCUCUCUCUCUUCUGUCAA   1759 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_018659841.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1557   GUGCUCUCUCUCUUCUGUCAA   1577 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009144564.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1154   GUGCUCUCUCUCUUCUGUCAA   1174 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103866616), mRNA	squamosa promoter-binding-like protein 9(LOC103866616)	coding protein	psRNATarget
XM_009103544.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1212   GUGCUCUCUCUCUUCUGUCAA   1232 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009103545.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1173   GUGCUCUCUCUCUUCUGUCAA   1193 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X3, mRNA	squamosa promoter-binding-like protein 2(LOC103827978)	coding protein	psRNATarget
XM_009115758.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1236   GUGCUCUCUCUCUUCUGUCAA   1256 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X1, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_018654907.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1235   GUGCUCUCUCUCUUCUGUCAA   1255 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_018659842.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1130   GUGCUCUCUCUCUUCUGUCAA   1150 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103827978), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_009104736.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1243   GUGCUCUCUCUCUUCUGUCAA   1263 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103829068), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103829068)	coding protein	psRNATarget
XM_009143798.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1077   GUGCUCUCUCUCUUCUGUCAA   1097 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 9 (LOC103865930), mRNA	squamosa promoter-binding-like protein 9(LOC103865930)	coding protein	psRNATarget
XM_009104738.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1300   GUGCUCUCUCUCUUCUGUCAA   1320 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103829069), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103829069)	coding protein	psRNATarget
XM_018655172.1	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1235   GUGCUCUCUCUCUUCUGUCAA   1255 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_009115520.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1230   GUGCUCUCUCUCUUCUGUCAA   1250 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103839042), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103839042)	coding protein	psRNATarget
XM_009115759.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1121   GUGCUCUCUCUCUUCUGUCAA   1141 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 2 (LOC103839253), transcript variant X2, mRNA	squamosa promoter-binding-like protein 2(LOC103839253)	coding protein	psRNATarget
XM_009111566.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1230   GUGCUCUCUCUCUUCUGUCAA   1250 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X2, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009111568.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:1225   GUGCUCUCUCUCUUCUGUCAA   1245 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 10 (LOC103835406), transcript variant X3, mRNA	squamosa promoter-binding-like protein 10(LOC103835406)	coding protein	psRNATarget
XM_009105834.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||| targets:745   GUGCUCUCUCUCUUCUGUCAA   765 Target Full Sequence	1.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103830125), mRNA	squamosa promoter-binding-like protein 15(LOC103830125)	coding protein	psRNATarget
XM_009115522.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1297   GUGCUUUCUCUCUUCUGUCAA   1317 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X1, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009129458.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||||||*||||||||||= targets:966   GUGCUCUCUCUCUUCUGUCAG   986 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 6 (LOC103852554), mRNA	squamosa promoter-binding-like protein 6(LOC103852554)	coding protein	psRNATarget
XM_009115524.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1234   GUGCUUUCUCUCUUCUGUCAA   1254 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X3, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115523.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1226   GUGCUUUCUCUCUUCUGUCAA   1246 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X2, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009115526.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||||=|||*||||||||||| targets:1206   GUGCUUUCUCUCUUCUGUCAA   1226 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 11 (LOC103839045), transcript variant X4, mRNA	squamosa promoter-binding-like protein 11(LOC103839045)	coding protein	psRNATarget
XM_009140754.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||=|||||*||||||||||| targets:793   GUGUUCUCUCUCUUCUGUCAA   813 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X1, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009140755.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |||=|||||*||||||||||| targets:766   GUGUUCUCUCUCUUCUGUCAA   786 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 15 (LOC103863019), transcript variant X2, mRNA	squamosa promoter-binding-like protein 15(LOC103863019)	coding protein	psRNATarget
XM_009134452.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |*|||||||*||||||||||* targets:1153   GCGCUCUCUCUCUUCUGUCAU   1173 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X3, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134450.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |*|||||||*||||||||||* targets:1060   GCGCUCUCUCUCUUCUGUCAU   1080 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X1, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009134451.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   |*|||||||*||||||||||* targets:1044   GCGCUCUCUCUCUUCUGUCAU   1064 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 13A (LOC103857275), transcript variant X2, mRNA	squamosa promoter-binding-like protein 13A(LOC103857275)	coding protein	psRNATarget
XM_009148024.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   **|||||||*||||||||||* targets:1075   CCGCUCUCUCUCUUCUGUCAU   1095 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103869942), mRNA	squamosa promoter-binding-like protein 5(LOC103869942)	coding protein	psRNATarget
XM_009117412.2	ncRNA:21   CACGAGAGAUAGAAGACAGUU   1   **|||||||*||||||||||* targets:635   CAGCUCUCUCUCUUCUGUCAU   655 Target Full Sequence	2.5	PREDICTED: Brassica rapa squamosa promoter-binding-like protein 5 (LOC103840895), mRNA	squamosa promoter-binding-like protein 5(LOC103840895)	coding protein	psRNATarget

Reference

1	PMID:18558089 "Characterization of conserved and novel microRNAs and their targets, including a TuMV-induced TIR-NBS-LRR class R gene-derived novel miRNA in Brassica"; He XF, Fang YY, Feng L, Guo HS; FEBS Lett. 582:2445-2452(2008).
2	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).