| ncRNA ID | bra-miR391-3p |
| Species | Brassica rapa |
| Class | miRNA |
| Genome position | chrA9:35664790-35664893 [-] |
| Reference genome | Brapa_1.1 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 16 - ACGGUAUCUCUCCUACGUAGC - 36 |
| Stem-loop(if miRNA) |
A - UUC U C G C - --U U GCA AUA AAGG GCU CG AGGAGAGAUA CG CAUCA CUUCU CU A ||| ||| |||| ||| || |||||||||| || ||||| ||||| || CGU UAU UUCC CGA GC UCCUCUCUAU GC GUGGU GAAGA GA A A A UAA U A G A A UUU G |
| Stem-loop sequence | GCAAAUAAAGGUUCGCUUCGCAGGAGAGAUAGCGCCAUCACUUCUUCUUAAGAGUUUAGAAGAUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGC |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| XM_009142132.2 |
|
2.0 | PREDICTED: Brassica rapa histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (LOC103864378), transcript variant X1, mRNA | histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6(LOC103864378) | coding protein | psRNATarget | |||||||||
| XM_009142133.1 |
|
2.0 | PREDICTED: Brassica rapa histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (LOC103864378), transcript variant X2, mRNA | histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6(LOC103864378) | coding protein | psRNATarget |
| 1 | PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014). |