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BaseInfo

ncRNA ID	ath-miR399e
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr2:14443504-14443612 [+]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	79 - UGCCAAAGGAGAUUUGCCUCG - 99
Stem-loop(if miRNA)	-   A     A AG        C   A       U     U      -CCCU  U  GAA GCAUU C  GGCGAAUC UCU UUGGCAG GGAAG UGAUGA     UA A  ||| ||||| |  |||||||| ||| ||||||| ||||| ||||||     || U  CUU CGUAA G  CCGUUUAG AGG AACCGUC CCUUU ACUACU     AU G A   -     C CU        -   A       U     U      CUUUU  U
Stem-loop sequence	GAAAGCAUUACAGGGCGAAUCCUCUAUUGGCAGUGGAAGUUGAUGACCCUUAUAUGUUAUUUUCUCAUCAUUUUCCUCUGCCAAAGGAGAUUUGCCUCGCAAUGCUUCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY074292.1	ncRNA:21   GCUCCGUUUAGAGGAAACCGU   1   =*=||||*||||||||||||| targets:740   UAGGGCAUAUCUCCUUUGGCA   760 Target Full Sequence	2.0	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GCUCCGUUUAGAGGAAACCGU   1   =*=||||*||||||||||||| targets:813   UAGGGCAUAUCUCCUUUGGCA   833 Target Full Sequence	2.0	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget
AY074292.1	ncRNA:21   GCUCCGUUUAGAGGAAACCGU   1   =*=|||||||||=|||||||| targets:607   UAGGGCAAAUCUUCUUUGGCA   627 Target Full Sequence	2.5	Arabidopsis thaliana putative E2, ubiquitin-conjugating enzyme (At2g33770) mRNA, complete cds	NA	coding protein	psRNATarget
NM_179887.3	ncRNA:21   GCUCCGUUUAGAGGAAACCGU   1   =*=|||||||||=|||||||| targets:680   UAGGGCAAAUCUUCUUUGGCA   700 Target Full Sequence	2.5	Arabidopsis thaliana phosphate 2 (PHO2), mRNA	phosphate 2(PHO2)	coding protein	psRNATarget

Reference

1	PMID:15200956 "Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"; Jones-Rhoades MW, Bartel DP; Mol Cell. 14:787-799(2004).
2	PMID:16954541 "MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"; Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC; Genome Res. 16:1276-1288(2006).
3	PMID:19815687 "Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"; Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW; J Exp Bot. 61:165-177(2010).