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BaseInfo

ncRNA ID novel_gma_miR1652
Species Glycine max
Class miRNA
Genome position Chr19:41434084-41434165 [+]
Reference genome Glycine_max_v2.0
Source SRR1451648;SRR1451649
Length 21
Mature sequence(if miRNA) 1 - UCCAUUUGGAUUUUGACGUCU - 21
Stem-loop(if miRNA) --      U  -          C C        ACAA  A  A
  UCCAUU GG AUUUUGACGU U AGCCUUGA    UG CG A
  |||||| || |||||||||| | ||||||||    || || U
  AGGUAA CC UAGAACUGUA A UCGGAAUU    AC GU C
UG      -  A          U A        ---C  C  C
Stem-loop sequence UCCAUUUGGAUUUUGACGUCUCAGCCUUGAACAAUGACGAAUCCUGCCACUUAAGGCUAAUAUGUCAAGAUACCAAUGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003537454.3
ncRNA:21   UCUGCAGUUUUAGGUUUACCU   1
  ***=|||||||||||||||||
targets:1133   CCUUGUCAAAAUCCAAAUGGA   1153

2.0 PREDICTED: Glycine max laccase-14-like (LOC100814128), mRNA laccase-14-like(LOC100814128) coding protein psRNATarget
XM_003536907.3
ncRNA:21   UCUGCAGUUUUAGGUUUACCU   1
  |||=*||=|||||||||||||
targets:490   AGAUUUCGAAAUCCAAAUGGA   510

3.0 PREDICTED: Glycine max transcription factor PIF1-like (LOC100792121), transcript variant X1, mRNA transcription factor PIF1-like(LOC100792121) coding protein psRNATarget
XM_006588653.2
ncRNA:21   UCUGCAGUUUUAGGUUUACCU   1
  |||=*||=|||||||||||||
targets:490   AGAUUUCGAAAUCCAAAUGGA   510

3.0 PREDICTED: Glycine max transcription factor PIF1-like (LOC100792121), transcript variant X2, mRNA transcription factor PIF1-like(LOC100792121) coding protein psRNATarget