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BaseInfo

ncRNA ID	bra-miR391-5p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:35664790-35664893 [-]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	68 - UUCGCAGGAGAGAUAGCGCCA - 88
Stem-loop(if miRNA)	A   -    UUC   U  C          G  C     -     --U  U GCA AUA AAGG   GCU CG AGGAGAGAUA CG CAUCA CUUCU   CU A ||| ||| ||||   ||| || |||||||||| || ||||| |||||   || CGU UAU UUCC   CGA GC UCCUCUCUAU GC GUGGU GAAGA   GA A    A   A    UAA   U  A          G  A     A     UUU  G
Stem-loop sequence	GCAAAUAAAGGUUCGCUUCGCAGGAGAGAUAGCGCCAUCACUUCUUCUUAAGAGUUUAGAAGAUGGUGACGGUAUCUCUCCUACGUAGCAAUCCUUAUAUAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009130098.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||||||||||||||||* targets:195   UGGUGCUAUCUCUCCUGCGAC   215 Target Full Sequence	2.0	PREDICTED: Brassica rapa calcium-transporting ATPase 10, plasma membrane-type-like (LOC103853180), transcript variant X2, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC103853180)	coding protein	psRNATarget
XM_018653423.1	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||||||||||||||||* targets:521   UGGUGCUAUCUCUCCUGCGAC   541 Target Full Sequence	2.0	PREDICTED: Brassica rapa calcium-transporting ATPase 10, plasma membrane-type-like (LOC103853180), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_009130106.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=||||||||||||||||* targets:521   UGGUGCUAUCUCUCCUGCGAC   541 Target Full Sequence	2.0	PREDICTED: Brassica rapa calcium-transporting ATPase 10, plasma membrane-type-like (LOC103853180), transcript variant X1, mRNA	calcium-transporting ATPase 10, plasma membrane-type-like(LOC103853180)	coding protein	psRNATarget
XM_009121981.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:103   UGGCGUUUUCUCUCCUGCGAA   123 Target Full Sequence	2.0	PREDICTED: Brassica rapa calcium-transporting ATPase 8, plasma membrane-type-like (LOC103845146), transcript variant X2, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC103845146)	coding protein	psRNATarget
XM_009121980.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||||=|*||||||||||||| targets:127   UGGCGUUUUCUCUCCUGCGAA   147 Target Full Sequence	2.0	PREDICTED: Brassica rapa calcium-transporting ATPase 8, plasma membrane-type-like (LOC103845146), transcript variant X1, mRNA	calcium-transporting ATPase 8, plasma membrane-type-like(LOC103845146)	coding protein	psRNATarget
XM_009139626.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=|=||||||||||||||* targets:274   UGGUGUUAUCUCUCCUGCGAC   294 Target Full Sequence	3.0	PREDICTED: Brassica rapa calcium-transporting ATPase 10, plasma membrane-type (LOC103861916), transcript variant X1, mRNA	calcium-transporting ATPase 10, plasma membrane-type(LOC103861916)	coding protein	psRNATarget
XM_009139627.2	ncRNA:21   ACCGCGAUAGAGAGGACGCUU   1   |||=|=||||||||||||||* targets:353   UGGUGUUAUCUCUCCUGCGAC   373 Target Full Sequence	3.0	PREDICTED: Brassica rapa calcium-transporting ATPase 10, plasma membrane-type (LOC103861916), transcript variant X2, mRNA	calcium-transporting ATPase 10, plasma membrane-type(LOC103861916)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).