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BaseInfo

ncRNA ID novel_gma_miR1629
Species Glycine max
Class miRNA
Genome position Chr17:30903447-30903667 [+]
Reference genome Glycine_max_v2.0
Source SRR1451648
Length 21
Mature sequence(if miRNA) 1 - UGAUUAUUGUUGUAGGGUAGA - 21
Stem-loop(if miRNA) --                  A                                                                 U              --      UA
  UGAUUAUUGUUGUAGGGU GAUGACUUAGAGGUUAGAAGACUUAGGAAUUUCUGGAAUAGGAUUAGGGUUCAUACAUACGGAUG ACUUCAUCUGUAUG  UGUUAC  A
  |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  ||||||  A
  ACUAAUAACAACAUCCCA CUACUGAAUCUCCAAUCUUCUGAAUCCUUAAAGACCUUAUCCUAAUCCCAAGUAUGUAUGCCUAC UGAAGUAGGCAUAC  GCAAUG  U
CA                  A                                                                 U              UU      UU
Stem-loop sequence UGAUUAUUGUUGUAGGGUAGAUGACUUAGAGGUUAGAAGACUUAGGAAUUUCUGGAAUAGGAUUAGGGUUCAUACAUACGGAUGUACUUCAUCUGUAUGUGUUACUAAAUUUGUAACGUUCAUACGGAUGAAGUUCAUCCGUAUGUAUGAACCCUAAUCCUAUUCCAGAAAUUCCUAAGUCUUCUAACCUCUAAGUCAUCAACCCUACAACAAUAAUCAAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT096392.1
ncRNA:21   AGAUGGGAUGUUGUUAUUAGU   1
  **|||=||||||=||||||||
targets:434   CAUACUCUACAAUAAUAAUCA   454

2.5 Soybean clone JCVI-FLGm-9D16 unknown mRNA NA coding protein psRNATarget
NM_001317478.1
ncRNA:21   AGAUGGGAUGUUGUUAUUAGU   1
  **|||=||||||=||||||||
targets:434   CAUACUCUACAAUAAUAAUCA   454

2.5 Glycine max uncharacterized LOC100789560 (LOC100789560), mRNA uncharacterized LOC100789560(LOC100789560) coding protein psRNATarget