Search result

BaseInfo

ncRNA ID	novel_gma_miR1624
Species	Glycine max
Class	miRNA
Genome position	Chr16:6634088-6634169 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451648
Length	21
Mature sequence(if miRNA)	62 - UCUCUCUUUUCUUCUAUCAAC - 82
Stem-loop(if miRNA)	--   C      -U      C       AA     C   CA   UGA AGAAGA  AGAGAG AUAGCUG  CAUAC CAA  G   ||| ||||||  |||||| |||||||  ||||| |||  G   ACU UCUUCU  UCUCUC UGUUGAC  GUAUG GUU  G CA   A      UU      U       GA     U   UC
Stem-loop sequence	UGACAGAAGAUAGAGAGCAUAGCUGAACAUACCCAACAGGGCUUUGUGUAUGAGCAGUUGUUCUCUCUUUUCUUCUAUCAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006599376.2	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   **|*=|||||||||||||||| targets:207   AAUCGUAGAAGAAAAGAGAGA   227 Target Full Sequence	2.0	PREDICTED: Glycine max tubulin alpha-3 chain-like (LOC100780531), transcript variant X2, mRNA	tubulin alpha-3 chain-like(LOC100780531)	coding protein	psRNATarget
XM_003548019.3	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   **|*=|||||||||||||||| targets:207   AAUCGUAGAAGAAAAGAGAGA   227 Target Full Sequence	2.0	PREDICTED: Glycine max tubulin alpha-3 chain-like (LOC100780531), transcript variant X1, mRNA	tubulin alpha-3 chain-like(LOC100780531)	coding protein	psRNATarget
XM_014765140.1	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   *|||=|||||||=|||||||| targets:25   UUUGGUAGAAGAGAAGAGAGA   45 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100305761 (LOC100305761), transcript variant X1, mRNA	uncharacterized LOC100305761(LOC100305761)	coding protein	psRNATarget
AK244018.1	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   |||||||*=|||||||||||| targets:44   GUUGAUAAGAGAAAAGAGAGA   64 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-01-N24	NA	coding protein	psRNATarget
BT098252.1	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   ||*||||||=||||||||||| targets:1260   GUGGAUAGAGGAAAAGAGAGA   1280 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-23C19 unknown mRNA	NA	coding protein	psRNATarget
BT098205.1	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   ||*||||||=||||||||||| targets:1260   GUGGAUAGAGGAAAAGAGAGA   1280 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-16F3 unknown mRNA	NA	coding protein	psRNATarget
XM_006588784.2	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   |*||=||||||||||||*||| targets:654   GGUGGUAGAAGAAAAGAUAGA   674 Target Full Sequence	2.5	PREDICTED: Glycine max beta-fructofuranosidase, insoluble isoenzyme 1-like (LOC100790364), transcript variant X2, mRNA	beta-fructofuranosidase, insoluble isoenzyme 1-like(LOC100790364)	coding protein	psRNATarget
XM_003535691.3	ncRNA:21   CAACUAUCUUCUUUUCUCUCU   1   |*||=||||||||||||*||| targets:672   GGUGGUAGAAGAAAAGAUAGA   692 Target Full Sequence	2.5	PREDICTED: Glycine max beta-fructofuranosidase, insoluble isoenzyme 1-like (LOC100790364), transcript variant X1, mRNA	beta-fructofuranosidase, insoluble isoenzyme 1-like(LOC100790364)	coding protein	psRNATarget