Search result

BaseInfo

ncRNA ID bra-miR156f-3p
Species Brassica rapa
Class miRNA
Genome position chrA9:31078747-31078923 [+]
Reference genome Brapa_1.1
Source miRBase
Length 23
Mature sequence(if miRNA) 102 - UGCUCACUGCUCUUUCUGUCAGA - 124
Stem-loop(if miRNA) UUGUGAGUGAAU   -          -  A    --C    AAA  -- ACAGAAGAGAGUGAGCACACAAAAGUAAAUUGCAUAUGUUGCAUUUGC
            GAG CUGGGGCAAA AG AACA   ACAG   CU  G                                                U
            ||| |||||||||| || ||||   ||||   ||  |
            CUC GACUCUGUUU UC UUGU   UGUC   CG  U                                                U
----------CU   U          C  C    UCC    ---  GU UCUCUAGUCGUGCCCUUAGACUGUCUUUCUCGUCACUCGUGCGUUCUC
Stem-loop sequence UUGUGAGUGAAUGAGCUGGGGCAAAAGAAACACACAGAAACUGACAGAAGAGAGUGAGCACACAAAAGUAAAUUGCAUAUGUUGCAUUUGCUUCUCUUGCGUGCUCACUGCUCUUUCUGUCAGAUUCCCGUGCUGAUCUCUUUGGCCUGUCCUUGUUCCUCUUUGUCUCAGUCUCUC

Reference

1 PMID:24559317
"Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis";
Jiang J, Lv M, Liang Y, Ma Z, Cao J;
BMC Genomics. 15:146(2014).