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BaseInfo

ncRNA ID	bra-miR172c-3p
Species	Brassica rapa
Class	miRNA
Genome position	chrA9:27738162-27738313 [+]
Reference genome	Brapa_1.1
Source	miRBase
Length	21
Mature sequence(if miRNA)	109 - AGAAUCUUGAUGAUGCUGCAG - 129
Stem-loop(if miRNA)	UUCAGACUUUGAA  AGUUGCAGUCAUUUUUUGCUAUUGCAUCAUCAUCAAGAUUCAGAAAUCAUAUUCCUUGAUGG              GC                                                              G              ||                                                              U              CG                                                              U -----UAUUUUUU  GUAAAUUAGCGGCGACGUCGUAGUAGUUCUAAGAGUUUGGUUUUUUCUGUCCGAGCUUCCUC
Stem-loop sequence	UUCAGACUUUGAAGCAGUUGCAGUCAUUUUUUGCUAUUGCAUCAUCAUCAAGAUUCAGAAAUCAUAUUCCUUGAUGGGUUCUCCUUCGAGCCUGUCUUUUUUGGUUUGAGAAUCUUGAUGAUGCUGCAGCGGCGAUUAAAUGGCUUUUUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_009128446.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||||||||* targets:55   AUGCAGCAUCAUCAAGAUUCA   75 Target Full Sequence	1.0	PREDICTED: Brassica rapa uncharacterized LOC103851575 (LOC103851575), mRNA	uncharacterized LOC103851575(LOC103851575)	coding protein	psRNATarget
JX041886.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1184   CUGCAGCAUCAUCAGGAUUCU   1204 Target Full Sequence	1.5	Brassica rapa cultivar Ragini AP2 variant 1 mRNA, complete cds	NA	coding protein	psRNATarget
XM_009139935.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1379   CUGCAGCAUCAUCAGGAUUCU   1399 Target Full Sequence	1.5	PREDICTED: Brassica rapa floral homeotic protein APETALA 2 (LOC103862143), transcript variant X2, mRNA	floral homeotic protein APETALA 2(LOC103862143)	coding protein	psRNATarget
XM_009139876.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1382   CUGCAGCAUCAUCAGGAUUCU   1402 Target Full Sequence	1.5	PREDICTED: Brassica rapa floral homeotic protein APETALA 2 (LOC103862143), transcript variant X1, mRNA	floral homeotic protein APETALA 2(LOC103862143)	coding protein	psRNATarget
XM_009140231.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   ||||||||||||||=|||||| targets:1361   CUGCAGCAUCAUCAGGAUUCU   1381 Target Full Sequence	1.5	PREDICTED: Brassica rapa floral homeotic protein APETALA 2 (LOC103862524), transcript variant X1, mRNA	floral homeotic protein APETALA 2(LOC103862524)	coding protein	psRNATarget
XM_009122283.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1544   AUGCAGCAUCAUCAGGAUUCU   1564 Target Full Sequence	1.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor TOE2 (LOC103845425), transcript variant X3, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC103845425)	coding protein	psRNATarget
XM_009128374.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1434   AUGCAGCAUCAUCAGGAUUCU   1454 Target Full Sequence	1.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor TOE2 (LOC103851522), mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC103851522)	coding protein	psRNATarget
XM_009122282.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1345   AUGCAGCAUCAUCAGGAUUCU   1365 Target Full Sequence	1.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor TOE2 (LOC103845425), transcript variant X2, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC103845425)	coding protein	psRNATarget
XM_009122281.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   *|||||||||||||=|||||| targets:1421   AUGCAGCAUCAUCAGGAUUCU   1441 Target Full Sequence	1.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor TOE2 (LOC103845425), transcript variant X1, mRNA	AP2-like ethylene-responsive transcription factor TOE2(LOC103845425)	coding protein	psRNATarget
XM_009135623.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   |*||||||||||||=|||||| targets:1422   CAGCAGCAUCAUCAGGAUUCU   1442 Target Full Sequence	1.5	PREDICTED: Brassica rapa ethylene-responsive transcription factor RAP2-7-like (LOC103858289), mRNA	ethylene-responsive transcription factor RAP2-7-like(LOC103858289)	coding protein	psRNATarget
XM_009105450.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   |*||||||||||||=|||||| targets:1491   CAGCAGCAUCAUCAGGAUUCU   1511 Target Full Sequence	1.5	PREDICTED: Brassica rapa ethylene-responsive transcription factor RAP2-7 (LOC103829752), transcript variant X2, mRNA	ethylene-responsive transcription factor RAP2-7(LOC103829752)	coding protein	psRNATarget
XM_009105449.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   |*||||||||||||=|||||| targets:1536   CAGCAGCAUCAUCAGGAUUCU   1556 Target Full Sequence	1.5	PREDICTED: Brassica rapa ethylene-responsive transcription factor RAP2-7 (LOC103829752), transcript variant X1, mRNA	ethylene-responsive transcription factor RAP2-7(LOC103829752)	coding protein	psRNATarget
XM_009145043.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   =||=|*||||||||||||||| targets:198   UUGUAACAUCAUCAAGAUUCU   218 Target Full Sequence	2.0	PREDICTED: Brassica rapa ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC103867016), transcript variant X2, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC103867016)	coding protein	psRNATarget
XM_009145042.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   =||=|*||||||||||||||| targets:221   UUGUAACAUCAUCAAGAUUCU   241 Target Full Sequence	2.0	PREDICTED: Brassica rapa ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like (LOC103867016), transcript variant X1, mRNA	ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like(LOC103867016)	coding protein	psRNATarget
XM_009117948.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   =|||||||||||||=|||||* targets:1117   UUGCAGCAUCAUCAGGAUUCC   1137 Target Full Sequence	2.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor SMZ (LOC103841411), mRNA	AP2-like ethylene-responsive transcription factor SMZ(LOC103841411)	coding protein	psRNATarget
XM_009105199.2	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   =*||=|||||||||=|||||| targets:1457   UGGCGGCAUCAUCAGGAUUCU   1477 Target Full Sequence	2.5	PREDICTED: Brassica rapa AP2-like ethylene-responsive transcription factor TOE3 (LOC103829531), mRNA	AP2-like ethylene-responsive transcription factor TOE3(LOC103829531)	coding protein	psRNATarget
XM_009104521.1	ncRNA:21   GACGUCGUAGUAGUUCUAAGA   1   |*|*||||||||||||*|||| targets:1556   CCGAAGCAUCAUCAAGCUUCU   1576 Target Full Sequence	2.5	PREDICTED: Brassica rapa uncharacterized LOC103828882 (LOC103828882), mRNA	uncharacterized LOC103828882(LOC103828882)	coding protein	psRNATarget

Reference

1	PMID:24559317 "Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis"; Jiang J, Lv M, Liang Y, Ma Z, Cao J; BMC Genomics. 15:146(2014).